Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN74_RS20465 Genome accession   NZ_CP107903
Coordinates   4688162..4688845 (+) Length   227 a.a.
NCBI ID   WP_327696003.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4683162..4693845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS20455 (OHN74_20450) - 4684237..4687629 (-) 3393 WP_327696001.1 S8 family serine peptidase -
  OHN74_RS20460 (OHN74_20455) - 4687991..4688116 (+) 126 WP_327696002.1 hypothetical protein -
  OHN74_RS20465 (OHN74_20460) vraR 4688162..4688845 (+) 684 WP_327696003.1 response regulator transcription factor Regulator
  OHN74_RS20470 (OHN74_20465) - 4688971..4689699 (+) 729 WP_327696004.1 class I SAM-dependent methyltransferase -
  OHN74_RS20475 (OHN74_20470) - 4689848..4691038 (+) 1191 WP_327696005.1 alpha/beta hydrolase -
  OHN74_RS20480 (OHN74_20475) - 4691187..4692077 (-) 891 WP_327696006.1 ricin-type beta-trefoil lectin domain protein -
  OHN74_RS20485 (OHN74_20480) - 4692317..4693693 (-) 1377 WP_327696007.1 MFS transporter -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24502.44 Da        Isoelectric Point: 8.5876

>NTDB_id=648507 OHN74_RS20465 WP_327696003.1 4688162..4688845(+) (vraR) [Streptomyces sp. NBC_00459]
MAIRVVVVDDQDMVRSGFAALLSAHSDIDVVGEAPNGRLGVEVSRHTHADVVLMDVRMPEMDGLEATRQLLDPPRGVVHR
PKVLMLTTFDVDDYIYEALRAGASGFLLKDAPVAQLVQAVRVIAAGDALLAPSITRRLIEDVARRRAAPPRAARLRLNGL
TPRETEVLSLVARGLSNTEIATRLVVAEQTVKTHMTRLLSKLGARDRAQLVVLAYESGLVVPGASPA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=648507 OHN74_RS20465 WP_327696003.1 4688162..4688845(+) (vraR) [Streptomyces sp. NBC_00459]
ATGGCAATTCGGGTGGTCGTCGTCGACGACCAGGACATGGTGCGCTCGGGATTCGCCGCGCTGCTGTCCGCACACAGCGA
CATCGACGTCGTGGGCGAGGCGCCCAACGGCCGGCTCGGCGTCGAGGTCAGCCGGCACACGCACGCCGACGTCGTGCTGA
TGGACGTACGGATGCCGGAGATGGACGGCCTGGAGGCCACCCGGCAGCTGCTGGACCCGCCGCGCGGTGTCGTCCACCGG
CCGAAGGTGCTCATGCTGACCACCTTCGACGTCGACGACTACATCTACGAGGCACTGCGGGCCGGCGCCAGCGGCTTCCT
CCTCAAGGACGCGCCGGTCGCCCAACTCGTGCAGGCGGTACGGGTGATCGCGGCCGGGGACGCGCTGCTCGCACCGTCCA
TCACCCGGCGCCTCATCGAGGACGTGGCCCGGCGCCGCGCCGCCCCGCCCCGGGCCGCCCGCCTGCGCCTGAACGGCCTC
ACCCCCCGGGAGACGGAGGTTCTGTCGCTGGTGGCGCGGGGCCTGTCGAACACCGAGATCGCGACACGGCTGGTGGTGGC
CGAGCAGACCGTCAAGACCCATATGACCCGGCTGCTCTCGAAGCTCGGCGCCCGCGACCGGGCCCAACTCGTCGTCCTCG
CCTACGAGTCGGGCCTCGTCGTGCCCGGGGCGTCGCCTGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.367

97.357

0.383