Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHN74_RS12905 Genome accession   NZ_CP107903
Coordinates   2946285..2948219 (+) Length   644 a.a.
NCBI ID   WP_327694712.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2941285..2953219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS12870 (OHN74_12880) - 2941354..2941872 (+) 519 WP_327694708.1 hypothetical protein -
  OHN74_RS12890 (OHN74_12900) - 2942495..2942800 (+) 306 WP_327694709.1 YtxH domain-containing protein -
  OHN74_RS12895 (OHN74_12905) - 2942942..2944402 (+) 1461 WP_327694710.1 FGGY family carbohydrate kinase -
  OHN74_RS12900 (OHN74_12910) rcrP 2944552..2946285 (+) 1734 WP_327694711.1 ABC transporter ATP-binding protein Regulator
  OHN74_RS12905 (OHN74_12915) rcrQ 2946285..2948219 (+) 1935 WP_327694712.1 ABC transporter ATP-binding protein Regulator
  OHN74_RS12910 (OHN74_12920) - 2948304..2949710 (-) 1407 WP_327694713.1 RNA polymerase sigma factor -
  OHN74_RS12915 (OHN74_12925) - 2949876..2950532 (+) 657 WP_327694714.1 hypothetical protein -
  OHN74_RS12920 (OHN74_12930) - 2950529..2951515 (+) 987 WP_327694715.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 70019.44 Da        Isoelectric Point: 5.1304

>NTDB_id=648486 OHN74_RS12905 WP_327694712.1 2946285..2948219(+) (rcrQ) [Streptomyces sp. NBC_00459]
MAGPMGRMMAGGGPDQHSLDFKVSGKRLLAQFRPERATMYVMLLTVFVSVGLSVVGPKILGRATDLVFSGIIGRQFESGS
TKAEVLASMRERGEGGMADMLSGTDFTPGKGIDFDAVGEVLGLALVVFVFAGLLMLVATRLVNRAVNRTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPMSFFIATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRQDESAQQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQQADPVPGVRPEELRGLVSLE
HVSFRYEPEKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAAMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGAAREREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHGDLLEADGAYARLYKAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=648486 OHN74_RS12905 WP_327694712.1 2946285..2948219(+) (rcrQ) [Streptomyces sp. NBC_00459]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGAGGCGGCCCCGACCAGCACTCGCTGGACTTCAAGGTGTCGGGCAAACG
GCTCCTCGCCCAGTTCAGGCCCGAACGGGCCACGATGTACGTGATGCTGCTCACGGTGTTCGTGAGCGTGGGCCTGTCGG
TGGTGGGCCCGAAGATCCTGGGGCGGGCGACCGACCTGGTCTTCTCCGGCATCATCGGACGGCAGTTCGAGAGCGGCAGT
ACGAAGGCCGAGGTTCTCGCGTCCATGCGGGAGCGCGGCGAGGGCGGCATGGCCGACATGCTCTCCGGTACGGACTTCAC
TCCGGGCAAGGGGATCGACTTCGACGCGGTGGGCGAGGTGCTGGGGCTCGCCCTGGTGGTGTTCGTGTTCGCCGGGCTGC
TGATGCTGGTCGCCACGCGGCTGGTGAACCGGGCGGTCAACCGGACCGTGTACCGGATGCGCGAGGACCTCCAGGCGAAG
CTGTCGCGGCTGCCCCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAGCTCATCAACTCGTTGCTGACGATCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGATGTCGTTCTTCATCGCCACGCGTGTCGGCAAG
CGGTCGCAGCCGCACTTCGTCCAGCAGTGGCGGACCACCGGCAAGCTGAACGCCCACATCGAGGAGATGTACACCGGGCA
CAACCTCGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCCCTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGTGGCATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTGGCC
GTGGTGGGGGGACTGCGGGTCGCTTCGGGCGCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTGGCTTCGGCCGAGCGGGTCTTCGAAC
TGCTGGACGCGGAGGAGCAGCAGGCCGATCCGGTGCCGGGGGTACGGCCCGAGGAGCTGCGGGGGCTGGTCTCGCTGGAG
CACGTGTCGTTCCGGTACGAGCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGGCGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGGCCCACGGGGGCGGGGAAGACCACTCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCTCCGGGGGGCGGA
TCACCCTCGACGGGGTGGACATCGCCGCCATGTCCCGGGACGAACTCCGGGCCGGTATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCCGCGCGTGAGCGTGAGGTGACGCGCGGGGAGATCGA
GGAGGCGGCGCGGGCCGCGCACGCGGACCGGTTCATCCGTACGTTGCCGGACGGGTACGACACCGTGATCGACGACGAGG
GGACGGGGGTCAGCGCGGGTGAGAAGCAACTCATCACGATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTG
GACGAGGCGACGAGTTCCGTGGACACCCGGACCGAGGTTCTCATCCAGAAGGCGATGGCCAAACTGGCGCACGGGCGAAC
GTCGTTCGTGATCGCGCACAGGCTGTCGACGATCCGCGACGCGGACACGATCCTGGTGATGGAGAACGGCTCGATCGTGG
AACAGGGCGCGCACGGGGATCTGTTGGAGGCGGACGGCGCCTACGCGCGGTTGTACAAGGCGCAGTTCGCGGAGGCGGTG
GCCGAGGTGGATTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-565)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.546

96.429

0.401