Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHN74_RS12900 Genome accession   NZ_CP107903
Coordinates   2944552..2946285 (+) Length   577 a.a.
NCBI ID   WP_327694711.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2939552..2951285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS12865 - 2940951..2941076 (-) 126 Protein_2554 aminobenzoate oxygenase -
  OHN74_RS12870 (OHN74_12880) - 2941354..2941872 (+) 519 WP_327694708.1 hypothetical protein -
  OHN74_RS12890 (OHN74_12900) - 2942495..2942800 (+) 306 WP_327694709.1 YtxH domain-containing protein -
  OHN74_RS12895 (OHN74_12905) - 2942942..2944402 (+) 1461 WP_327694710.1 FGGY family carbohydrate kinase -
  OHN74_RS12900 (OHN74_12910) rcrP 2944552..2946285 (+) 1734 WP_327694711.1 ABC transporter ATP-binding protein Regulator
  OHN74_RS12905 (OHN74_12915) rcrQ 2946285..2948219 (+) 1935 WP_327694712.1 ABC transporter ATP-binding protein Regulator
  OHN74_RS12910 (OHN74_12920) - 2948304..2949710 (-) 1407 WP_327694713.1 RNA polymerase sigma factor -
  OHN74_RS12915 (OHN74_12925) - 2949876..2950532 (+) 657 WP_327694714.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62407.78 Da        Isoelectric Point: 6.2755

>NTDB_id=648485 OHN74_RS12900 WP_327694711.1 2944552..2946285(+) (rcrP) [Streptomyces sp. NBC_00459]
MLIQLLRTYLKPYKKPIGLLVLLQLLQTCATLYLPTLNADIIDKGVVKGDTGYILLFGTVMIGISLVQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQLLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFGKANHELTEVSLSTGRLLAL
MFPIVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PSAPVVELRRHGHLEIRGAGFRYPGAEEPVLKAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TVEPKLLARTVGLVPQKPYLFAGTVASNLRYGNPDATDEELWRALEVAQGKGFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALARETAEATVVIVAQRVSTIREADRIIVLDEGRVVGTGSHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=648485 OHN74_RS12900 WP_327694711.1 2944552..2946285(+) (rcrP) [Streptomyces sp. NBC_00459]
GTGCTCATACAACTTCTGCGCACCTACCTGAAGCCCTACAAGAAACCCATCGGCCTGCTCGTGCTGCTCCAGCTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGCTCAACGCGGACATCATCGACAAGGGCGTGGTGAAGGGCGACACCGGCTACA
TCCTGCTCTTCGGCACCGTGATGATCGGCATCTCGCTGGTGCAGGTCGTCTGCAACATCGGTGCCGTGTACTACGGCGCC
CGTACGGCGTCGGCGCTCGGCCGGGACGTGCGTGCCGCCGTCTTCGACCGTGTGCAGTCGTTCTCGGCGCGCGAGGTCGG
GCAGTTCGGCGCGCCCTCGCTGATCACGCGTACGACCAATGACGTCCAGCAGGTGCAGTTGCTCGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGGATCGTGCTCGCGCTGGGCCTGGATGTGCCGCTGTCGGGTGTG
CTGGTCGCCGTCGTGCCGGTGCTGGGCATCTGCGTCACGTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGACGATGCA
GGTACGGCTCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGGGACG
AGTACGAGAAGGACCGGTTCGGGAAGGCCAACCACGAGCTGACCGAGGTGTCGCTGAGCACCGGGCGGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTCGTCAATGTCTCGTCCATCGCCGTGGTGTGGTTCGGTGCTCATCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACGTCGAGCAGTGTGGTGCCG
CCCTCCGCTCCCGTCGTCGAACTGCGGCGGCACGGGCATCTGGAGATCCGGGGGGCCGGGTTCCGCTATCCGGGCGCCGA
GGAGCCGGTGCTCAAGGCCGTCGACCTGGTGGCGAGGCCCGGTGAGGTGACCGCCGTGATCGGGTCCACGGGCAGCGGTA
AGTCGACGCTGCTGGGGCTCGTACCGCGGCTGTTCGACGCGACCGACGGAGAGGTGCTCGTCGACGGCGTGGACGTGGCC
ACCGTGGAGCCGAAGTTGCTGGCCAGGACGGTGGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGGACCGTGGCGAG
CAATCTGCGCTACGGCAATCCTGACGCCACGGACGAGGAGCTCTGGCGCGCTCTGGAGGTTGCTCAGGGCAAGGGGTTCG
TCGAGCGGCTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGTACGAATGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCGGCCCTGCGGACGGCGCTCGCGCGCGAGACCGCCGAGGCGACCGTCGTGATCGTCGCGCAGCGGGTGTCCACGATCA
GGGAGGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCAGCCACCACGAGCTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.071

100

0.393