Detailed information NTG0064847

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: KW3_RS0104570
• Genome accession: NZ_AKGH01000001
• Coordinates: 984929..986353 (-)
• Length: 474 a.a.
• NCBI ID: WP_001183680.1
• Uniprot ID: A0A0H3AJR3
• Organism: Vibrio cholerae H1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 979929..991353

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KW3_RS0104545	purT	980438..981613 (-)	1176	WP_000468082.1	phosphoribosylglycinamide formyltransferase 2	-
KW3_RS0104550	-	981767..982642 (-)	876	WP_000462872.1	AEC family transporter	-
KW3_RS0104555	cdd	982801..983688 (-)	888	WP_001245905.1	cytidine deaminase	-
KW3_RS0104560	-	983858..984532 (-)	675	WP_000266245.1	LrgB family protein	-
KW3_RS0104565	-	984523..984897 (-)	375	WP_001881007.1	CidA/LrgA family protein	-
KW3_RS0104570	sbcB	984929..986353 (-)	1425	WP_001183680.1	exodeoxyribonuclease I	Machinery gene
KW3_RS0104575	-	986499..987872 (-)	1374	WP_000117953.1	L-cystine transporter	-
KW3_RS0104580	msrB	988218..988664 (+)	447	WP_000935885.1	peptide-methionine (R)-S-oxide reductase MsrB	-
KW3_RS0104590	cobT	989275..990300 (+)	1026	WP_000887084.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
KW3_RS0104595	-	990300..991085 (+)	786	WP_000718969.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54598.02 Da
• Isoelectric Point: 6.0792

>NTDB_id=64847 KW3_RS0104570 WP_001183680.1 984929..986353(-) (sbcB) [Vibrio cholerae H1]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDTEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=64847 KW3_RS0104570 WP_001183680.1 984929..986353(-) (sbcB) [Vibrio cholerae H1]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCAAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAACCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACTAGCTGGATTGTGCCTATTGCTTGGCATCCAACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCCGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCACACCTTAACCGATACCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

3D structure

• AlphaFold DB: A0A0H3AJR3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1