Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHN74_RS01885 Genome accession   NZ_CP107903
Coordinates   490800..491771 (-) Length   323 a.a.
NCBI ID   WP_327699949.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00459     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 485800..496771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN74_RS01875 (OHN74_01875) - 487345..488853 (+) 1509 WP_327692727.1 glycoside hydrolase family 43 protein -
  OHN74_RS01880 (OHN74_01880) - 488982..490742 (+) 1761 WP_327692728.1 cellulase family glycosylhydrolase -
  OHN74_RS01885 (OHN74_01885) cytR 490800..491771 (-) 972 WP_327699949.1 LacI family DNA-binding transcriptional regulator Regulator
  OHN74_RS01890 (OHN74_01890) - 492112..493458 (+) 1347 WP_327692729.1 jacalin-like lectin -
  OHN74_RS01895 (OHN74_01895) - 493618..494526 (-) 909 WP_327699950.1 AraC family transcriptional regulator -
  OHN74_RS01900 (OHN74_01900) - 494655..495434 (+) 780 WP_327692730.1 MBL fold metallo-hydrolase -
  OHN74_RS01905 (OHN74_01905) - 495485..496501 (+) 1017 WP_327692731.1 superoxide dismutase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35220.23 Da        Isoelectric Point: 5.7609

>NTDB_id=648464 OHN74_RS01885 WP_327699949.1 490800..491771(-) (cytR) [Streptomyces sp. NBC_00459]
MAYIAESAGVSVPTVSKVLNGRSGVSDETRARVEELIRRYGYRKPPKNRSKLVELVFRELESMWAVEIIRGVERVARRNK
IGVLVSEFGLRDTPTRTIDDTVERRPQCVLSVAQLSEEERGQLKARGIPFVVFDPNEELPDDVPFVGATNWRGGQAATRH
LIGLGHRRIAMISGPDHPFCLARLAGYTSALTEAGLPVEPDLVVKTLLTREDGYTAARDLLSRPERPTAVFTANDMQAMG
VYQAARELGLSIPHDLSVVGYDDVPAVAWVDPPLTTVHQPLAEMAVAATELALALGRGEDVPQVGVEIATTLTVRESTAP
PKG

Nucleotide


Download         Length: 972 bp        

>NTDB_id=648464 OHN74_RS01885 WP_327699949.1 490800..491771(-) (cytR) [Streptomyces sp. NBC_00459]
ATCGCGTACATCGCCGAGTCCGCCGGCGTCTCGGTGCCCACCGTGTCGAAGGTGCTCAACGGCCGGTCCGGGGTGTCGGA
CGAGACGCGGGCCCGCGTCGAGGAGCTGATCCGCCGGTACGGCTACCGCAAGCCGCCGAAGAACCGCAGCAAACTCGTGG
AGCTGGTCTTCCGCGAGCTGGAGAGCATGTGGGCCGTGGAGATCATCCGTGGTGTCGAACGGGTGGCCCGCAGGAACAAG
ATCGGTGTCCTGGTGTCGGAGTTCGGTCTCCGGGACACTCCGACCAGGACCATCGACGACACCGTGGAACGGCGCCCGCA
GTGCGTCCTGTCGGTGGCACAGCTGTCGGAGGAGGAGCGGGGCCAACTGAAGGCGAGGGGTATCCCGTTCGTCGTCTTCG
ACCCGAACGAGGAGCTCCCCGACGACGTGCCGTTCGTCGGGGCCACCAACTGGAGGGGCGGCCAGGCCGCGACCCGGCAC
CTGATCGGGCTGGGGCACCGGCGCATCGCCATGATCAGCGGTCCTGATCACCCCTTCTGTCTCGCGCGGTTGGCCGGCTA
CACCTCAGCGCTCACGGAAGCCGGCTTGCCGGTGGAGCCGGACCTGGTGGTCAAGACCCTCCTCACCCGTGAGGACGGCT
ACACGGCGGCACGCGACCTGCTCTCCCGTCCCGAGCGCCCCACCGCTGTCTTCACCGCCAACGACATGCAGGCCATGGGT
GTCTACCAGGCCGCGCGAGAACTCGGGTTGAGCATCCCGCACGACCTGAGTGTGGTGGGCTACGACGACGTACCGGCGGT
CGCCTGGGTCGATCCGCCGCTGACCACGGTCCACCAGCCCCTGGCGGAGATGGCGGTGGCCGCCACCGAACTGGCACTGG
CACTGGGCCGTGGCGAGGACGTGCCCCAGGTGGGTGTGGAGATAGCCACCACCCTCACCGTCCGCGAGAGCACGGCCCCG
CCGAAGGGTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(4-43)

Periplasmic binding protein-like domain (Peripla_BP_3)

(158-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.471

100

0.384
  cytR Vibrio parahaemolyticus RIMD 2210633

34.897

100

0.368