Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG870_RS33745 Genome accession   NZ_CP107902
Coordinates   7238243..7238926 (+) Length   227 a.a.
NCBI ID   WP_266522512.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00461     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7233243..7243926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG870_RS33725 (OG870_33705) - 7233281..7233511 (-) 231 WP_266522504.1 hypothetical protein -
  OG870_RS33730 (OG870_33710) - 7233954..7236074 (+) 2121 WP_266522506.1 DNA topoisomerase IV subunit B -
  OG870_RS33735 (OG870_33715) - 7236574..7237098 (+) 525 WP_327691787.1 DUF1453 domain-containing protein -
  OG870_RS33740 (OG870_33720) - 7237095..7238246 (+) 1152 WP_266590414.1 histidine kinase -
  OG870_RS33745 (OG870_33725) vraR 7238243..7238926 (+) 684 WP_266522512.1 response regulator transcription factor Regulator
  OG870_RS33750 (OG870_33730) - 7238996..7239562 (+) 567 WP_266522515.1 DUF485 domain-containing protein -
  OG870_RS33755 (OG870_33735) - 7239559..7241151 (+) 1593 WP_266522517.1 cation acetate symporter -
  OG870_RS33760 (OG870_33740) - 7241226..7241918 (-) 693 WP_266590416.1 response regulator -
  OG870_RS33765 (OG870_33745) - 7242079..7242894 (+) 816 WP_266522521.1 ABC transporter ATP-binding protein -
  OG870_RS33770 (OG870_33750) - 7242884..7243762 (+) 879 WP_266522523.1 ABC transporter permease -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24147.64 Da        Isoelectric Point: 4.8577

>NTDB_id=648441 OG870_RS33745 WP_266522512.1 7238243..7238926(+) (vraR) [Streptomyces sp. NBC_00461]
MTEGAETRPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGDEAVQLVAELAPDVVLMDLRMPRCDGVEATRRIRAE
HPGTQVVVLTTYADDESLFPALRAGARGYLTKDAGGDEIVRAVQSVLSGDAGLSPSIQRRLLERLSDPEPPPATIMEAPD
GLTARETEVLLLIAEGLSNQEIARKLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYAKGLARPPVG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=648441 OG870_RS33745 WP_266522512.1 7238243..7238926(+) (vraR) [Streptomyces sp. NBC_00461]
ATGACGGAAGGGGCGGAGACGCGGCCCGCGCGCGTGGTCGTCGCGGACGACCAGACCGTCGTGCGTGAGGGCATCGTGAT
GCTGCTGGGCCTGCTGCCCGGGATCGAGGTGGTCGGCGCCGCGGGCGACGGGGACGAGGCGGTGCAGCTTGTCGCCGAGC
TCGCCCCGGACGTGGTGCTGATGGACCTGCGTATGCCCCGCTGTGACGGTGTGGAGGCGACCCGGCGCATTCGTGCCGAG
CACCCCGGGACGCAAGTCGTGGTGCTCACGACGTACGCGGACGACGAGTCCTTGTTCCCGGCGTTGCGGGCGGGGGCACG
GGGTTATCTCACCAAGGACGCGGGAGGGGACGAGATCGTACGGGCCGTGCAGAGTGTGCTGTCCGGGGACGCGGGGCTGT
CGCCCAGCATCCAACGGCGGTTGCTGGAGCGGCTGTCCGATCCGGAGCCGCCGCCGGCGACCATCATGGAGGCGCCGGAC
GGGCTCACAGCACGGGAGACGGAGGTGCTGCTGCTGATCGCCGAAGGCCTCAGTAACCAGGAAATCGCCCGGAAGCTGCA
TGTCTCCACCGCGACCGTGAAGACCCACATCAACAACCTCTTCGCCAAGACCGGGCTCAAGGATCGCGCCCAGGCGGTGC
GTTACGCGTATGCGAAGGGGCTTGCGCGGCCGCCGGTGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-123)

Bacterial regulatory proteins, luxR family (GerE)

(161-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.336

92.952

0.366