Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   KW3_RS0100850 Genome accession   NZ_AKGH01000001
Coordinates   170302..170820 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae H1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 165302..175820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW3_RS0100840 - 165712..168567 (+) 2856 WP_001233047.1 M16 family metallopeptidase -
  KW3_RS0100845 gshA 168679..170253 (+) 1575 WP_000032608.1 glutamate--cysteine ligase -
  KW3_RS0100850 luxS 170302..170820 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  KW3_RS0100855 - 170890..172170 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  KW3_RS0100860 - 172253..173047 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  KW3_RS0100865 ffh 173260..174645 (+) 1386 WP_000462720.1 signal recognition particle protein -
  KW3_RS0100870 rpsP 174881..175129 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  KW3_RS0100875 rimM 175157..175711 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=64838 KW3_RS0100850 WP_001130227.1 170302..170820(+) (luxS) [Vibrio cholerae H1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=64838 KW3_RS0100850 WP_001130227.1 170302..170820(+) (luxS) [Vibrio cholerae H1]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment