Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG912_RS24395 Genome accession   NZ_CP107899
Coordinates   5434649..5436382 (-) Length   577 a.a.
NCBI ID   WP_327711242.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00464     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5429649..5441382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG912_RS24385 (OG912_24385) - 5431535..5432674 (+) 1140 WP_327713530.1 RNA polymerase sigma factor -
  OG912_RS24390 (OG912_24390) rcrQ 5432718..5434649 (-) 1932 WP_327711241.1 ABC transporter ATP-binding protein Regulator
  OG912_RS24395 (OG912_24395) rcrP 5434649..5436382 (-) 1734 WP_327711242.1 ABC transporter ATP-binding protein Regulator
  OG912_RS24400 (OG912_24400) - 5436552..5438000 (-) 1449 WP_326736072.1 FGGY family carbohydrate kinase -
  OG912_RS24405 (OG912_24405) - 5438067..5438366 (-) 300 WP_326736071.1 YtxH domain-containing protein -
  OG912_RS24425 - 5439201..5439311 (+) 111 Protein_4810 hypothetical protein -
  OG912_RS24430 (OG912_24430) - 5439477..5439761 (+) 285 WP_327713531.1 hypothetical protein -
  OG912_RS24435 (OG912_24435) - 5439769..5441199 (-) 1431 WP_327711243.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62637.57 Da        Isoelectric Point: 5.0561

>NTDB_id=648360 OG912_RS24395 WP_327711242.1 5434649..5436382(-) (rcrP) [Streptomyces sp. NBC_00464]
MLIKLLRAYLGPYKKPIALLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTGYIVQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDDYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVNPVRELAAQGHLEVRGADFRYPGAEESVLRSVDLVARAGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEIAQAKEFVEGLEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETRGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=648360 OG912_RS24395 WP_327711242.1 5434649..5436382(-) (rcrP) [Streptomyces sp. NBC_00464]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACTCTCTACTTGCCCACCCTGAACGCGGACATCATTGACAACGGTGTCGTCCAGGGGGACACGGGCTACA
TCGTCCAGTACGGCGGCGTGATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCC
CGCACCGCGTCCGCGCTCGGCCGTGACGTCCGGGCCTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGCGAGGTCGG
CCGGTTCGGTGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTACTCGGCATCGCGGTGAGCCTCATCGTGCGGAAGATGCGCCCGCTGTTCCGGACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGCGACG
ACTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAGCTGACGGACGTGGCACTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGTGCGCTGACGGCGTTCCTGTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGTGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCCAGCGTGGTGCCC
CCGGTGAACCCGGTGCGGGAGCTCGCCGCCCAGGGACATCTGGAGGTGCGCGGTGCGGACTTCCGCTACCCCGGTGCCGA
GGAGTCGGTGCTGCGCTCGGTGGACCTGGTGGCGCGGGCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGCCTCGTACCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTACGG
ACCCTGGATCCGGTGCTGCTGGCGAAGACCGTGAGTCTGGTCCCGCAGAAGCCGTATCTCTTCTCCGGCACGGTCGCGAC
GAATCTGCGGTACGGGAATCCGGACGCGAGCGACGAGGAGCTGTGGCACGCGCTGGAGATCGCGCAGGCCAAGGAGTTCG
TCGAGGGTCTGGAGCACGGGCTCGACGCACCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
TCGATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCCACGGA
CGCGGCGCTGCGCGCGGCGCTGCTGCGGGAGACCCGGGGGGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGCGTCGTCGGTTCCGGCAGCCATCACGAGCTGATGGAAGGCAAT
GAGACATACCGGGAGATCGTTCTCTCGCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.252

94.107

0.388