Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG912_RS24390 Genome accession   NZ_CP107899
Coordinates   5432718..5434649 (-) Length   643 a.a.
NCBI ID   WP_327711241.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00464     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5427718..5439649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG912_RS24380 (OG912_24380) dnaG 5429397..5431304 (+) 1908 WP_327711240.1 DNA primase -
  OG912_RS24385 (OG912_24385) - 5431535..5432674 (+) 1140 WP_327713530.1 RNA polymerase sigma factor -
  OG912_RS24390 (OG912_24390) rcrQ 5432718..5434649 (-) 1932 WP_327711241.1 ABC transporter ATP-binding protein Regulator
  OG912_RS24395 (OG912_24395) rcrP 5434649..5436382 (-) 1734 WP_327711242.1 ABC transporter ATP-binding protein Regulator
  OG912_RS24400 (OG912_24400) - 5436552..5438000 (-) 1449 WP_326736072.1 FGGY family carbohydrate kinase -
  OG912_RS24405 (OG912_24405) - 5438067..5438366 (-) 300 WP_326736071.1 YtxH domain-containing protein -
  OG912_RS24425 - 5439201..5439311 (+) 111 Protein_4810 hypothetical protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69299.68 Da        Isoelectric Point: 5.1227

>NTDB_id=648359 OG912_RS24390 WP_327711241.1 5432718..5434649(-) (rcrQ) [Streptomyces sp. NBC_00464]
MAGPGGRMMAGGAPTERSMDFKGSSKRLLKRFAAEKATLYVMLVAVALSVALSVVGPKILGKATDLVFAGVVGRGMDAGT
TKEQAVEGLRRSNSGLADMLSKVDFTPGQGMDFDAIGHVLLVALAVYVGAGLLMLVSTRLSIRVINRVVFQLREDLQTKL
SRLPLSYFDRQKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVAAKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERIFELLDAEEQDADPAKGEAEFPGELRGSVSL
ENVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGDVTREQIEEAARAAHADRFIRTLPDGYDTRIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEAKGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=648359 OG912_RS24390 WP_327711241.1 5432718..5434649(-) (rcrQ) [Streptomyces sp. NBC_00464]
ATGGCCGGGCCTGGTGGACGCATGATGGCGGGCGGGGCGCCGACCGAGCGGTCCATGGACTTCAAGGGCTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGGCGGAGAAGGCCACCCTGTACGTGATGCTGGTGGCCGTCGCGCTGAGCGTGGCGCTCTCCG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGTGTCGTCGGCCGCGGAATGGACGCGGGGACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAGGAGCAACAGCGGTCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGGCAGGGCATGGACTTCGACGCGATCGGCCACGTGCTGCTCGTGGCGCTGGCCGTGTACGTCGGTGCCGGGCTGCTGA
TGCTGGTGTCGACGCGACTGTCGATCCGGGTGATCAACCGGGTCGTCTTCCAGCTGCGCGAGGACCTTCAGACGAAGCTG
TCACGGCTGCCGCTGTCGTACTTCGACCGGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGGCAGCTCATCAACTCGCTGCTGACCATCGTCGGCGTGCTCGTGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGGCAAAGGTCGGCAAGCGC
TCCCAGCCGCAGTTCGTCCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCGGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATCGCTGTC
GTCGGCGGGCTGCGGGTCGCATCGGGCGCCCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGGATCGCCTCGGCGGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGACGCCGACCCGGCGAAGGGCGAGGCCGAGTTCCCCGGGGAGCTGCGCGGCAGCGTGTCCCTG
GAGAACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAGCGTCGAGCCGGGCCACACGGT
CGCGATCGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACCGGGGGCC
GGATCGCTCTCGACGGGGTCGACATCGCGAAGATGTCGCGCGACGACCTGCGCTCGGGAATCGGCATGGTCCTGCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGTGCCTCGGGCGATGTCACCCGTGAACAGATCGAGGA
GGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCCGACGGCTACGACACACGCATCGACGACGAGGGAT
CGGGTGTCAGTGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTCGTGCTCGAC
GAGGCGACCAGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCGGTCTCGCACACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGATGCCGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGAGGCCAAGGGCGCGTACGCCCGGCTGTACGCGGCCCAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(57-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.423

97.045

0.383