Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG912_RS08250 Genome accession   NZ_CP107899
Coordinates   1938091..1938741 (+) Length   216 a.a.
NCBI ID   WP_326738795.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00464     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1933091..1943741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG912_RS08220 (OG912_08215) - 1933234..1933875 (-) 642 WP_327708798.1 TetR/AcrR family transcriptional regulator -
  OG912_RS08225 (OG912_08220) - 1933957..1934739 (+) 783 WP_327708799.1 ATP-binding cassette domain-containing protein -
  OG912_RS08230 (OG912_08225) - 1934762..1935511 (+) 750 WP_327708800.1 ABC transporter permease -
  OG912_RS08235 (OG912_08230) - 1935525..1936097 (+) 573 WP_326738798.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG912_RS08240 (OG912_08235) - 1936152..1936727 (-) 576 WP_327708801.1 hypothetical protein -
  OG912_RS08245 (OG912_08240) - 1936880..1938094 (+) 1215 WP_327708802.1 histidine kinase -
  OG912_RS08250 (OG912_08245) vraR 1938091..1938741 (+) 651 WP_326738795.1 response regulator transcription factor Regulator
  OG912_RS08255 (OG912_08250) - 1938920..1940791 (+) 1872 WP_327708803.1 glycoside hydrolase family 18 chitinase -
  OG912_RS08260 (OG912_08255) - 1940893..1941339 (-) 447 WP_326740774.1 DUF2550 domain-containing protein -
  OG912_RS08265 (OG912_08260) - 1941480..1941854 (-) 375 WP_148020742.1 F0F1 ATP synthase subunit epsilon -
  OG912_RS08270 (OG912_08265) atpD 1941964..1943406 (-) 1443 WP_326738793.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22775.30 Da        Isoelectric Point: 4.8446

>NTDB_id=648325 OG912_RS08250 WP_326738795.1 1938091..1938741(+) (vraR) [Streptomyces sp. NBC_00464]
MTIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAGDGEEAVRLARELRPDLVLMDIQMPRLDGVSATKQVVAERLADVLV
LTTFDLDEYVFGALRAGASGFLLKDTEARGLLDAVRTVARGEGLIAPSVTRRLIAEFAGTAPPRPSGGAGTTALDALTRR
EREVLGCLGEGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGV

Nucleotide


Download         Length: 651 bp        

>NTDB_id=648325 OG912_RS08250 WP_326738795.1 1938091..1938741(+) (vraR) [Streptomyces sp. NBC_00464]
ATGACGATCCGGGTTCTGGTCGCCGAGGACCAGTCGGCCGTACGGGCGGGGCTCGTGCTCATCCTGGGCAGCGCACCGGA
CATCGAGGTCGTCGGGGAGGCCGGTGACGGCGAGGAGGCCGTCCGGCTGGCCCGCGAACTGCGCCCGGATCTGGTGCTGA
TGGACATCCAGATGCCCCGGCTGGACGGGGTGTCCGCGACGAAGCAGGTGGTCGCGGAGCGGCTGGCGGACGTGCTGGTG
CTGACGACGTTCGACCTGGACGAGTACGTGTTCGGCGCGCTGCGGGCCGGGGCGTCGGGCTTTCTGCTGAAGGACACCGA
GGCGCGCGGGCTGCTCGACGCGGTGCGCACGGTGGCGCGCGGCGAGGGGCTGATCGCTCCGTCGGTGACGCGCCGGCTGA
TCGCGGAGTTCGCCGGGACCGCGCCGCCCCGGCCGTCGGGGGGTGCCGGCACGACGGCCCTGGACGCGCTCACCCGGCGC
GAGCGCGAGGTGCTCGGCTGCCTCGGGGAGGGCCTGTCGAACGCGGAGATCGCGGTGCGGCTCTCGATGGCCGAGGCGAC
GGTAAAGACGCACGTCAGCCGGTTGCTGGGGAAGCTGGAGCTGCGCAGCCGGGTCCAGGCGGCGGTGCTGGCACAGGAGT
TGGGCGTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.509

98.148

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.403