Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG912_RS06940 Genome accession   NZ_CP107899
Coordinates   1629274..1630482 (-) Length   402 a.a.
NCBI ID   WP_326740790.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00464     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1624274..1635482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG912_RS06920 (OG912_06915) - 1624579..1624917 (-) 339 WP_136330688.1 P-II family nitrogen regulator -
  OG912_RS06925 (OG912_06920) - 1624914..1626266 (-) 1353 WP_326739027.1 ammonium transporter -
  OG912_RS06930 (OG912_06925) - 1626637..1628112 (-) 1476 WP_327708623.1 hypothetical protein -
  OG912_RS06935 (OG912_06930) - 1628538..1629197 (+) 660 WP_327708624.1 bifunctional DNA primase/polymerase -
  OG912_RS06940 (OG912_06935) pilA 1629274..1630482 (-) 1209 WP_326740790.1 signal recognition particle-docking protein FtsY Machinery gene
  OG912_RS06945 (OG912_06940) - 1630668..1632059 (+) 1392 WP_327708625.1 cytosine permease -
  OG912_RS06950 (OG912_06945) - 1632123..1633088 (+) 966 WP_327708626.1 LLM class flavin-dependent oxidoreductase -
  OG912_RS06955 (OG912_06950) - 1633159..1634577 (-) 1419 WP_327708627.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 42233.26 Da        Isoelectric Point: 4.5343

>NTDB_id=648319 OG912_RS06940 WP_326740790.1 1629274..1630482(-) (pilA) [Streptomyces sp. NBC_00464]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPRDASRRTIEEVGLPPEEAAGKAPE
TAEPEAPAAPALDVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRE
RVRVLGTRTPEELRKLLREELLTLLGTDFDRAVKTEGGAETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADT
FRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLD
EILLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDALI
GD

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=648319 OG912_RS06940 WP_326740790.1 1629274..1630482(-) (pilA) [Streptomyces sp. NBC_00464]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAGGCCG
AAACGCCGCGCGACGCATCGCGCCGCACCATCGAGGAGGTCGGCCTTCCGCCCGAGGAGGCCGCCGGGAAGGCCCCGGAA
ACCGCCGAGCCGGAGGCGCCCGCAGCCCCCGCGCTGGACGTCCCCGAGCCCACCGCCGGCCGTCTCGTACGGCTCCGGGC
CCGGCTCGCCCGCTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGGGACAACCTCGACGAGGACACCT
GGGAGGAGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCGCCCCCACCCAGGAACTGGTCGAACGGCTCAGGGAG
CGCGTCCGCGTCCTCGGCACCCGTACCCCCGAGGAGCTGAGGAAGCTGCTGCGTGAGGAGCTCCTCACTCTTCTCGGCAC
CGACTTCGACCGCGCGGTCAAGACGGAGGGCGGCGCCGAAACCCCCGGCGTCGTGATGGTCGTCGGCGTCAACGGCACCG
GCAAGACCACCACGACGGGCAAGCTGGCCCGGGTGCTGGTGGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCCGACACC
TTCCGTGCCGCCGCCGCCGATCAGCTCCAGACCTGGGGCGAGCGCGTCGGTGCCCGCACCGTGCGCGGACCCGAGGGCGG
CGACCCGGCGTCGATCGCCTTCGACGCCGTGAAGGAAGGGATCGCCGAGGGTGCCGACGTCGTCCTCATCGACACGGCGG
GCCGGCTGCACACCAAGACCGGGCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGACCCCTCGAC
GAGATCCTGCTCGTCCTCGACGCCACCACCGGGCAGAACGGCCTGGTGCAGGCGCGGGTGTTCGCCGAGGTCGTCGACAT
CACCGGCATCGTCCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGCTGGGCGTAC
CGGTGAAGCTCGTCGGGCTCGGCGAGGGGCCGGACGATCTGGCTCCGTTCGAGCCGGAGGCGTTCGTGGACGCCCTGATC
GGGGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(203-400)

SRP54-type protein, helical bundle domain (SRP54_N)

(116-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.059

87.811

0.378