Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L2629_RS12300 Genome accession   NZ_CP091198
Coordinates   2335288..2336961 (+) Length   557 a.a.
NCBI ID   WP_002404473.1    Uniprot ID   A0AAJ1Y112
Organism   Enterococcus faecalis strain UK045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2330288..2341961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2629_RS12265 (L2629_12200) - 2330961..2331191 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  L2629_RS12270 (L2629_12205) - 2331191..2332072 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  L2629_RS12275 (L2629_12210) - 2332086..2332901 (+) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  L2629_RS12280 (L2629_12215) - 2333267..2333824 (+) 558 WP_236334937.1 matrixin family metalloprotease -
  L2629_RS12285 (L2629_12220) - 2333829..2334074 (+) 246 WP_236334943.1 hypothetical protein -
  L2629_RS12290 (L2629_12225) - 2334081..2334689 (+) 609 WP_236334952.1 hypothetical protein -
  L2629_RS12295 (L2629_12230) - 2334821..2335270 (+) 450 WP_002358881.1 arginine repressor -
  L2629_RS12300 (L2629_12235) recN 2335288..2336961 (+) 1674 WP_002404473.1 DNA repair protein RecN Machinery gene
  L2629_RS12305 (L2629_12240) - 2337053..2337163 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  L2629_RS12310 (L2629_12245) - 2337231..2338196 (-) 966 WP_002386196.1 magnesium transporter CorA family protein -
  L2629_RS12315 (L2629_12250) - 2338441..2338833 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  L2629_RS12320 (L2629_12255) mraZ 2339067..2339552 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  L2629_RS12325 (L2629_12260) rsmH 2339567..2340523 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  L2629_RS12330 (L2629_12265) ftsL 2340540..2340947 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62655.07 Da        Isoelectric Point: 4.5521

>NTDB_id=648292 L2629_RS12300 WP_002404473.1 2335288..2336961(+) (recN) [Enterococcus faecalis strain UK045]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAVHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=648292 L2629_RS12300 WP_002404473.1 2335288..2336961(+) (recN) [Enterococcus faecalis strain UK045]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTAATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGTTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTAGATACAGGAGTCAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.596

100

0.497