Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG210_RS22545 Genome accession   NZ_CP107896
Coordinates   5019444..5021177 (-) Length   577 a.a.
NCBI ID   WP_328326304.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5014444..5026177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS22535 (OG210_22535) - 5016222..5017412 (+) 1191 WP_371538483.1 sigma-70 family RNA polymerase sigma factor -
  OG210_RS22540 (OG210_22540) rcrQ 5017471..5019444 (-) 1974 WP_328326306.1 ABC transporter ATP-binding protein Regulator
  OG210_RS22545 (OG210_22545) rcrP 5019444..5021177 (-) 1734 WP_328326304.1 ABC transporter ATP-binding protein Regulator
  OG210_RS22550 (OG210_22550) - 5021324..5022805 (-) 1482 WP_328326302.1 FGGY family carbohydrate kinase -
  OG210_RS22555 (OG210_22555) - 5022836..5023135 (-) 300 WP_164258730.1 YtxH domain-containing protein -
  OG210_RS22575 (OG210_22575) - 5023665..5024417 (-) 753 WP_371540439.1 tyrosine-type recombinase/integrase -
  OG210_RS22580 - 5024523..5024675 (-) 153 WP_371538485.1 hypothetical protein -
  OG210_RS22585 (OG210_22585) - 5024642..5025232 (-) 591 WP_328326297.1 peptidase inhibitor family I36 protein -
  OG210_RS22590 (OG210_22590) - 5025775..5026074 (+) 300 WP_328326295.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62550.85 Da        Isoelectric Point: 6.4052

>NTDB_id=648286 OG210_RS22545 WP_328326304.1 5019444..5021177(-) (rcrP) [Streptomyces sp. NBC_00466 strain NBC 00466]
MLITLLRTYLRPYKKPMAMLALLQLLQTCATLYLPTLNADIIDNGVVKGDSGYILSYGGLMIAISVVQVICNGGAVYYGA
RTASALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIVRRMRPLFREMQVRLDTVNRVLREQITGNRVIRAFVKDAYEKERFKGANADLTDVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTDSSVVP
PVNPVTELTRHGHLEIRGAGFKYPGAEASVLREVALEALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGKDVR
ELDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALDVAQAKGFVEKLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALRRETAQATVVIVAQRVSTIRDADRIIVMDEGQVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=648286 OG210_RS22545 WP_328326304.1 5019444..5021177(-) (rcrP) [Streptomyces sp. NBC_00466 strain NBC 00466]
GTGCTCATAACACTTCTGCGGACCTATTTGCGTCCGTACAAGAAACCCATGGCCATGCTGGCGCTGCTTCAGCTGCTCCA
GACCTGCGCCACCCTCTATCTGCCGACGCTCAACGCGGACATCATTGACAACGGTGTCGTCAAGGGCGACTCGGGTTACA
TCCTGAGCTACGGCGGTCTCATGATCGCCATCAGCGTGGTTCAGGTGATCTGCAACGGGGGCGCCGTCTACTACGGCGCC
CGGACCGCGTCCGCACTCGGCCGGGACATCCGTGCCGGTGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTCGG
GCACTTCGGTGCCCCGTCCCTCATCACCCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGCCTCGGCGCCGATCATGTGCGTGGGCGCCATCGTGCTGGCGCTCGGCCAGGACGTCCCGCTCTCGCTCGTA
CTGATCGCGGTCGTCCCGGTCATGCTCGTACTGGTCTCCCTGATCGTCCGGCGGATGCGGCCCCTCTTCCGGGAGATGCA
GGTCCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGAAGGACG
CGTACGAGAAGGAGCGCTTCAAGGGCGCCAACGCCGACCTGACCGATGTCTCCCTGGGGACCGCGCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTGGTGAACGTGTCGTCGATCGCGGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGCGATGCAGATCGGGGCGCTCACCGCGTTCCTCTCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTGCTCTCCACCGACTCCAGCGTGGTGCCG
CCGGTGAATCCCGTCACCGAGCTGACCAGGCACGGCCATCTGGAGATCCGCGGGGCCGGGTTCAAGTACCCGGGCGCCGA
GGCGTCGGTGCTGCGGGAGGTCGCTCTGGAGGCGCTGCCCGGTGAGACGACCGCGGTGATCGGGTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCCCGGCTGTTCGACGCCACGGGCGGCGAGGTGCTGGTGGACGGCAAGGACGTAAGG
GAGCTCGACCCCGTCCTGCTGGCGAAGACCGTGTCCCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACCGTCGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGATGTGGCGCAGGCCAAGGGGTTCG
TCGAGAAGCTCGAAGGCGGGCTGGACGCGCCGATCGCCCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGCCAGCGGCTG
GCGATCGCCAGGACGCTGGTCCAGCGGCCGGAGATCTATCTTTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGACCGCACTGCGGCGTGAGACCGCCCAGGCGACCGTGGTGATCGTCGCCCAGCGCGTCTCGACCATCC
GCGACGCGGACCGGATCATCGTCATGGACGAGGGCCAGGTCGTCGGGACCGGCCGGCACCACGAGCTGATGGACGGAAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.966

100

0.404