Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG210_RS18520 Genome accession   NZ_CP107896
Coordinates   4124148..4125128 (+) Length   326 a.a.
NCBI ID   WP_328327566.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4119148..4130128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS18495 (OG210_18490) - 4119229..4119867 (+) 639 WP_371537739.1 TetR/AcrR family transcriptional regulator -
  OG210_RS18500 (OG210_18495) - 4120190..4121719 (+) 1530 WP_328327574.1 MFS transporter -
  OG210_RS18505 (OG210_18500) - 4121877..4122383 (-) 507 WP_371537742.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG210_RS18510 (OG210_18505) - 4122484..4123265 (+) 782 Protein_3654 dioxygenase -
  OG210_RS18515 (OG210_18510) - 4123395..4123922 (-) 528 WP_328327568.1 N-acetyltransferase family protein -
  OG210_RS18520 (OG210_18515) rpoS 4124148..4125128 (+) 981 WP_328327566.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG210_RS18525 (OG210_18520) - 4125436..4127043 (-) 1608 WP_371537745.1 MFS transporter -
  OG210_RS18530 (OG210_18525) - 4127106..4128089 (+) 984 WP_371537748.1 helix-turn-helix transcriptional regulator -
  OG210_RS18535 (OG210_18530) - 4128221..4128967 (-) 747 WP_328327562.1 DUF6227 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36495.24 Da        Isoelectric Point: 5.1281

>NTDB_id=648276 OG210_RS18520 WP_328327566.1 4124148..4125128(+) (rpoS) [Streptomyces sp. NBC_00466 strain NBC 00466]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVYAQRILDGSVDSKAGGASRDEL
EALIAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDTKPARVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGRLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=648276 OG210_RS18520 WP_328327566.1 4124148..4125128(+) (rpoS) [Streptomyces sp. NBC_00466 strain NBC 00466]
ATGGCAACCCGTGCCGTCGCCCGTCGATCCGACAGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATAGCACGTACGCCACTGCTCGACGCCGAAAAGGAGGTCGAGCTGTCCCAGACCA
TCGAGGCCGGGGTGTACGCCCAGCGGATCCTCGACGGTTCCGTGGACAGTAAGGCGGGTGGGGCCTCGCGTGACGAGCTG
GAGGCGCTGATTGCCGCCGGGGAGCGCGCCAAGGACGTCTTCATCCGGTCCAACCTGCGCCTGGTCGTCGCTGTGGCCCG
CCGCTATCCGCGAGCGGGTCTGCCGCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCCACGTATGCGACCTGGTGGATCCGGCAGGCCATCACCCGGTCGATAGCCGAT
CAGTCGCGCACCATCCGGCTCCCTGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGTCCAGCGCGAATTCAACCG
CGAGCACGGCCGTGACCCGGAGCACGAGGAGATCGCCGCCGAGCTGGACACCAAGCCGGCGCGTGTGAGCGATGTGCTGG
ACTGGGCCCGTGACCCGGTCAGCCTGAACATGCCGGTGGACGACCAGGGCGAGACCCAGTTCGGCGACCTCCTGGAGGAC
ACGTCGGCGGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGTGAGGAGCTCGACGAACTGATCGGCAGGCTCGA
TCACCGCACGGCTTCGATCATCAAGATGCGCTTCGGCATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AACACGGGCTGACGCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCGACGACGTG
GGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.667

92.025

0.374