Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG210_RS02395 Genome accession   NZ_CP107896
Coordinates   526589..527233 (+) Length   214 a.a.
NCBI ID   WP_328332879.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 521589..532233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS02380 (OG210_02390) - 523654..524250 (-) 597 WP_328332883.1 ankyrin repeat domain-containing protein -
  OG210_RS02385 (OG210_02395) - 524344..524925 (-) 582 WP_328332881.1 heme-binding protein -
  OG210_RS02390 (OG210_02400) - 525396..526592 (+) 1197 WP_328335657.1 sensor histidine kinase -
  OG210_RS02395 (OG210_02405) vraR 526589..527233 (+) 645 WP_328332879.1 response regulator transcription factor Regulator
  OG210_RS02400 (OG210_02410) - 527350..528291 (-) 942 WP_371534902.1 urease accessory protein UreD -
  OG210_RS02405 (OG210_02415) ureG 528288..528965 (-) 678 WP_328335655.1 urease accessory protein UreG -
  OG210_RS02410 (OG210_02420) - 529081..529767 (-) 687 WP_328335654.1 urease accessory UreF family protein -
  OG210_RS02415 (OG210_02425) ureC 529847..531571 (-) 1725 WP_328332877.1 urease subunit alpha -
  OG210_RS02420 (OG210_02430) - 531571..532014 (-) 444 WP_328332875.1 urease subunit beta -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22338.80 Da        Isoelectric Point: 6.7584

>NTDB_id=648241 OG210_RS02395 WP_328332879.1 526589..527233(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
MSTPPPVRIVVCDDHVVVRAGLLALLGSAPGIDVVGEAGTGEEAVALAAKLVPDVVLMDLQLGAGIDGVETTRRITSAAV
PPHGPHVLVLTTYDTDADITRAIEAGATGYLLKAVRPDELFDAIHAAAQGRTTLSPPIASRVMARMRSPQPSLTGRELDI
LGQLAHGLGNRDIARALFISEATVKTHLGRIYSKLGVETRAGAVATAKEQRLIP

Nucleotide


Download         Length: 645 bp        

>NTDB_id=648241 OG210_RS02395 WP_328332879.1 526589..527233(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
GTGAGTACCCCGCCCCCGGTCCGGATCGTCGTCTGCGACGACCACGTCGTCGTCCGCGCGGGCCTGCTCGCTCTGCTGGG
CAGCGCCCCCGGCATCGACGTGGTCGGCGAGGCCGGCACCGGGGAGGAAGCGGTGGCACTCGCCGCCAAGCTGGTCCCCG
ATGTGGTCCTCATGGACCTCCAGCTGGGCGCGGGCATCGACGGCGTCGAGACCACCCGCCGCATCACGTCCGCCGCGGTC
CCCCCGCACGGCCCGCATGTGCTGGTCCTCACCACGTACGACACGGACGCCGACATCACCCGCGCCATCGAGGCCGGCGC
CACCGGATATCTGCTGAAGGCCGTGCGCCCCGATGAACTCTTCGACGCCATCCACGCGGCGGCGCAGGGCCGCACCACGC
TCTCCCCTCCGATCGCCAGCCGGGTGATGGCCCGGATGCGCAGCCCGCAGCCCTCACTCACCGGGCGGGAACTGGACATC
CTCGGCCAGCTGGCCCACGGCCTCGGCAACCGTGACATCGCCCGCGCCCTGTTCATCAGCGAGGCGACCGTGAAGACCCA
TCTGGGCCGTATCTACAGCAAGCTGGGCGTCGAGACACGGGCGGGGGCCGTCGCGACGGCGAAGGAGCAGCGCCTCATTC
CGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-124)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.441

98.598

0.369