Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG210_RS02060 Genome accession   NZ_CP107896
Coordinates   451043..451687 (+) Length   214 a.a.
NCBI ID   WP_328332992.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 446043..456687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS02040 (OG210_02040) - 447098..447901 (+) 804 WP_328333000.1 IclR family transcriptional regulator -
  OG210_RS02045 (OG210_02045) - 447973..448665 (-) 693 WP_328332998.1 ABC transporter ATP-binding protein -
  OG210_RS02050 (OG210_02050) - 448662..449705 (-) 1044 WP_371534879.1 ABC transporter permease -
  OG210_RS02055 (OG210_02055) - 449841..451046 (+) 1206 WP_371534880.1 sensor histidine kinase -
  OG210_RS02060 (OG210_02060) vraR 451043..451687 (+) 645 WP_328332992.1 response regulator transcription factor Regulator
  OG210_RS02065 (OG210_02065) - 451656..452012 (-) 357 WP_328332990.1 VOC family protein -
  OG210_RS02070 (OG210_02070) - 452026..452334 (-) 309 WP_328332988.1 DUF5955 family protein -
  OG210_RS02075 (OG210_02075) - 452599..453168 (+) 570 WP_371540139.1 NTP transferase domain-containing protein -
  OG210_RS02080 (OG210_02080) aceB 453382..455004 (+) 1623 WP_328332986.1 malate synthase A -
  OG210_RS02085 (OG210_02085) - 455276..455896 (+) 621 WP_328332984.1 TIGR03086 family metal-binding protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 22223.41 Da        Isoelectric Point: 6.2317

>NTDB_id=648240 OG210_RS02060 WP_328332992.1 451043..451687(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
MTIRLLLADDHPVVRAGLRAVLDTEPGFRVAGEAATAEQAVELAASGEFDVVLMDLQFGAGMHGAEATAAIAAVEGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRAPGESLTRRELEVLQLVGDG
LSNQQISKALFLSQATVKSHLVHIYAKLGVDSRTSAVAVASARRLIRRAGGSAH

Nucleotide


Download         Length: 645 bp        

>NTDB_id=648240 OG210_RS02060 WP_328332992.1 451043..451687(+) (vraR) [Streptomyces sp. NBC_00466 strain NBC 00466]
ATGACGATCCGGCTGCTGCTCGCCGACGACCATCCGGTGGTACGGGCCGGGCTGCGCGCCGTCCTCGACACCGAGCCGGG
TTTCCGGGTGGCCGGGGAGGCGGCGACCGCCGAACAGGCCGTGGAGCTGGCCGCTTCGGGAGAGTTCGACGTCGTCCTGA
TGGATCTCCAGTTCGGCGCGGGCATGCACGGCGCGGAGGCCACGGCCGCCATCGCCGCCGTCGAGGGGGCGCCCCGGGTC
CTGGTGCTGACGACGTACGACACGGACGCGGACATCCTGGCCGCCGTCGAGGCCGGTGCGAGCGGCTATCTGCTGAAGGA
CGCGCCGCCCGAGGAGCTGGCCGCCGCTGTGCGGACCGCGGCGGCGGGCCGCTCGGCGCTGGCGCCCGCCGTCGCGCACC
GGCTGATGGACCGGATGCGCGCACCGGGTGAGTCGCTCACCCGCCGGGAGCTGGAGGTGCTGCAGCTGGTCGGGGACGGT
CTGTCGAACCAGCAGATCAGCAAGGCGCTGTTCCTCAGCCAGGCGACGGTGAAGTCCCATCTGGTGCACATCTACGCCAA
GCTGGGTGTGGACTCCCGTACTTCGGCGGTGGCCGTTGCATCGGCGCGGCGGCTCATCCGCCGTGCCGGTGGCTCAGCAC
ATTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(144-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.619

98.131

0.369