Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG803_RS36050 Genome accession   NZ_CP107894
Coordinates   7962072..7962731 (+) Length   219 a.a.
NCBI ID   WP_327686296.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7957072..7967731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS36030 (OG803_36070) - 7957757..7958140 (-) 384 WP_327686292.1 DUF6479 family protein -
  OG803_RS36035 (OG803_36075) - 7958404..7959606 (+) 1203 WP_327686293.1 FUSC family protein -
  OG803_RS36040 (OG803_36080) - 7960316..7960714 (-) 399 WP_327686294.1 DUF6223 family protein -
  OG803_RS36045 (OG803_36085) - 7960948..7962075 (+) 1128 WP_327686295.1 sensor histidine kinase -
  OG803_RS36050 (OG803_36090) vraR 7962072..7962731 (+) 660 WP_327686296.1 response regulator transcription factor Regulator
  OG803_RS36055 (OG803_36095) - 7962897..7963046 (+) 150 WP_327686297.1 type II toxin-antitoxin system RelE/ParE family toxin -
  OG803_RS36060 (OG803_36100) - 7963967..7964386 (-) 420 WP_327686298.1 arsenate reductase ArsC -
  OG803_RS36065 (OG803_36105) - 7964432..7965073 (-) 642 WP_327686299.1 arsenate reductase ArsC -
  OG803_RS36070 (OG803_36110) - 7965149..7965463 (+) 315 WP_327686300.1 metalloregulator ArsR/SmtB family transcription factor -
  OG803_RS36075 (OG803_36115) - 7965522..7966298 (+) 777 WP_327687004.1 MIP/aquaporin family protein -
  OG803_RS36080 (OG803_36120) - 7966453..7966818 (-) 366 WP_327686301.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23858.75 Da        Isoelectric Point: 5.2957

>NTDB_id=648225 OG803_RS36050 WP_327686296.1 7962072..7962731(+) (vraR) [Streptomyces sp. NBC_00467]
MIRVLLVDDQPLIRSGFRALLDLEDDIEVVAEAAEGEEGLALLKEHLPDVALIDIQMPVMDGIEATRLIAADPALLGVHV
VMLTNYGMDEYIFEALRAGAAGFLVKDIVPEDLLHAVRVAARGDALLAPSITRKLIHRYVTQPLPPTGAALTMLTSRERE
AVALVAQGLSNDQIADRMVISPMTAKTHINRAMTKLHTRDRAQLVVRAYESGLVAPHSH

Nucleotide


Download         Length: 660 bp        

>NTDB_id=648225 OG803_RS36050 WP_327686296.1 7962072..7962731(+) (vraR) [Streptomyces sp. NBC_00467]
ATGATCCGTGTACTGCTGGTCGACGACCAACCGCTCATCCGCAGCGGCTTCCGCGCACTGCTCGACCTCGAAGACGACAT
CGAGGTGGTGGCCGAAGCCGCCGAGGGCGAAGAAGGTTTGGCGCTCCTCAAAGAGCACCTGCCCGATGTCGCTCTCATTG
ATATCCAGATGCCGGTCATGGACGGCATCGAGGCGACCCGCCTTATCGCCGCAGACCCGGCCCTGCTTGGCGTGCACGTC
GTCATGCTGACCAACTACGGCATGGACGAGTACATCTTCGAAGCACTGCGCGCCGGCGCCGCCGGGTTCCTGGTCAAGGA
CATCGTGCCGGAAGACCTCCTGCACGCCGTCCGGGTCGCCGCCCGCGGCGATGCCTTGCTCGCCCCGTCCATCACTCGCA
AGCTGATCCACCGGTACGTCACCCAGCCACTCCCTCCAACTGGCGCCGCACTGACGATGCTGACCAGCCGGGAACGCGAA
GCGGTCGCCCTGGTCGCACAGGGCCTGTCCAACGACCAGATCGCCGACCGCATGGTGATCAGCCCGATGACCGCGAAGAC
CCACATCAACCGGGCCATGACCAAACTCCACACCCGCGACCGCGCCCAACTCGTCGTCCGCGCCTACGAGTCCGGCCTAG
TCGCCCCGCACAGTCATTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.089

97.26

0.361