Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG803_RS35325 Genome accession   NZ_CP107894
Coordinates   7825397..7825612 (-) Length   71 a.a.
NCBI ID   WP_327686186.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7820397..7830612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS35305 (OG803_35340) - 7820660..7822903 (+) 2244 WP_327686182.1 helix-turn-helix domain-containing protein -
  OG803_RS35310 (OG803_35345) - 7822910..7823467 (+) 558 WP_327686183.1 XRE family transcriptional regulator -
  OG803_RS35315 (OG803_35350) - 7823707..7824624 (+) 918 WP_327686184.1 NADP-dependent oxidoreductase -
  OG803_RS35320 (OG803_35355) - 7825032..7825376 (-) 345 WP_327686185.1 DUF6233 domain-containing protein -
  OG803_RS35325 (OG803_35360) dinR/lexA 7825397..7825612 (-) 216 WP_327686186.1 hypothetical protein Regulator
  OG803_RS35330 (OG803_35365) - 7825609..7825854 (-) 246 WP_327686187.1 hypothetical protein -
  OG803_RS35335 (OG803_35370) - 7825903..7826856 (-) 954 WP_327686188.1 ATP-dependent DNA ligase -
  OG803_RS35340 (OG803_35375) - 7827190..7828245 (+) 1056 WP_327686189.1 TerC family protein -
  OG803_RS35345 (OG803_35385) - 7828981..7829088 (+) 108 Protein_6978 DUF5133 domain-containing protein -
  OG803_RS35350 (OG803_35390) - 7829685..7830565 (+) 881 Protein_6979 SigB/SigF/SigG family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 7922.89 Da        Isoelectric Point: 9.1510

>NTDB_id=648223 OG803_RS35325 WP_327686186.1 7825397..7825612(-) (dinR/lexA) [Streptomyces sp. NBC_00467]
MTDHLSARQERVLGCIRERIAETGEGPSIRQIEQLVGLSSTSSVAYQLARYEDRGLISRSTSSWRSVRLGT

Nucleotide


Download         Length: 216 bp        

>NTDB_id=648223 OG803_RS35325 WP_327686186.1 7825397..7825612(-) (dinR/lexA) [Streptomyces sp. NBC_00467]
GTGACGGATCACCTGAGCGCACGGCAGGAGCGGGTCCTCGGCTGCATCCGCGAGCGGATCGCCGAAACCGGCGAAGGCCC
GAGCATCCGGCAGATAGAGCAGCTGGTCGGCCTGTCGTCCACCTCGTCCGTGGCCTACCAGCTCGCTCGGTACGAAGACC
GCGGCCTGATCAGCCGCAGCACCAGCAGCTGGCGCTCGGTCCGCCTCGGCACCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

40

91.549

0.366