Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OG803_RS26995 Genome accession   NZ_CP107894
Coordinates   5974026..5977076 (+) Length   1016 a.a.
NCBI ID   WP_327684846.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5969026..5982076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS26975 (OG803_27010) - 5970079..5971077 (+) 999 WP_327684842.1 TerC/Alx family metal homeostasis membrane protein -
  OG803_RS26980 (OG803_27015) - 5971212..5972258 (-) 1047 WP_327684843.1 S66 peptidase family protein -
  OG803_RS26985 (OG803_27020) - 5972470..5973126 (-) 657 WP_327684844.1 MBL fold metallo-hydrolase -
  OG803_RS26990 (OG803_27025) - 5973137..5973829 (-) 693 WP_327684845.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG803_RS26995 (OG803_27030) uvrA 5974026..5977076 (+) 3051 WP_327684846.1 excinuclease ABC subunit UvrA Machinery gene
  OG803_RS27000 (OG803_27035) - 5977192..5978091 (-) 900 WP_327684847.1 carbohydrate kinase -
  OG803_RS27005 (OG803_27040) - 5978218..5978649 (+) 432 WP_327684848.1 Rieske (2Fe-2S) protein -
  OG803_RS27010 (OG803_27045) - 5978698..5979639 (-) 942 WP_327684849.1 hypothetical protein -
  OG803_RS27015 (OG803_27050) uvrC 5980043..5982016 (+) 1974 WP_327684850.1 excinuclease ABC subunit UvrC -

Sequence

Protein


Download         Length: 1016 a.a.        Molecular weight: 111510.86 Da        Isoelectric Point: 7.8497

>NTDB_id=648214 OG803_RS26995 WP_327684846.1 5974026..5977076(+) (uvrA) [Streptomyces sp. NBC_00467]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPITRQSPQAIVDRVLELPEGSRFQVLSPLVRERK
GEFVDLFSDLQTKGYSRARVDGRTIQLAEPPTLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDEGAIHPWSHGHTK
EYFGRLIGGLAQALGFSTDMPWGGLPQRAKKALLYGHKTQVEVRYRNRYGRERAYTTPAFEGAVQFVKRRHQEAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIADVAAMSISECAEFLGRLTLNARDKKIAERVLKEVNERLRFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKDLLANKASITGQYLAGKRSIPTPDIRRPMDPGRQLTVHGARENNLRDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRRLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
ALDFFEAVPTISRHLRTLNEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGSTVYVLDEPTTGLHFEDISKLINVL
SGLVDKGNTVIVIEHNLDVIKTADWVVDMGPEGGNGGGLVIAEGTPEQIAGVPTSHTGKFLRDILDTERISDAVVPQARS
GTRKAAAKKPATTAAANSVPTVKAPVAKNTAKKAVAKKTAAKKTAAKKTAARARKA

Nucleotide


Download         Length: 3051 bp        

>NTDB_id=648214 OG803_RS26995 WP_327684846.1 5974026..5977076(+) (uvrA) [Streptomyces sp. NBC_00467]
GTGGCCGACCGTCTCATCGTTCGTGGCGCTCGCGAGCACAATCTCAAGAACGTTTCGCTCGACCTCCCCCGTGACTCCCT
CATCGTCTTCACGGGGCTCTCCGGGTCGGGCAAGTCCTCGCTCGCCTTCGACACGATCTTCGCCGAGGGCCAGCGCCGGT
ACGTGGAATCCCTGTCGTCGTACGCCCGCCAGTTCCTCGGGCAGATGGACAAGCCGGACGTCGACTTCATCGAGGGTCTC
TCCCCCGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAATCCGCGCTCGACGGTCGGCACCATCACCGAGGTCTACGA
CTACCTCCGTCTGCTGTTCGCGCGGATCGGCAAGCCGCACTGTCCCGAGTGCGGCCGGCCCATCACGCGCCAGTCGCCGC
AGGCCATCGTCGACAGGGTGCTCGAGCTTCCCGAGGGCAGCCGCTTCCAGGTGCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCTCCGATCTCCAGACCAAGGGATACAGCCGGGCCCGGGTCGACGGTCGGACGATCCAGCT
CGCCGAGCCGCCGACGCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGCCTCACGGTCAAGGACAGCG
CCAAGCGCCGGCTGACCGACTCCGTGGAGACCGCGCTCGGCCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGGATGTACTCGGAGCACCTGTACTGCCCGTACGACGACCTGTCCTTCGAGGAGCT
CGAGCCGCGCTCGTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACCGGCATCGGCACGCGCATGGAGGTCG
ACCCCGAGCTGATCGTCCCGGACGAGGAGAAGTCCCTCGACGAGGGTGCGATCCACCCCTGGTCGCACGGCCACACCAAG
GAGTACTTCGGCCGGCTGATCGGCGGGCTCGCCCAGGCGCTCGGATTCTCCACCGACATGCCCTGGGGCGGCCTGCCGCA
GCGTGCCAAGAAGGCCCTGCTGTACGGCCACAAGACCCAGGTCGAGGTCCGCTACCGCAACAGGTACGGCAGGGAGCGCG
CGTACACCACGCCCGCCTTCGAAGGCGCGGTGCAGTTCGTCAAGCGGCGGCACCAGGAGGCCGAGAGCGACTCCAGCAGG
GAGCGCTTCGAGGGCTACATGCGCGAAGTCCCCTGTCCCACCTGCGAGGGCACCCGGCTGAAGCCGATCGTCCTCGCGGT
GACGGTGATGGAGAAGTCCATCGCCGACGTCGCCGCGATGTCGATCAGCGAGTGCGCCGAGTTCCTCGGCCGTCTGACGC
TGAACGCCCGGGACAAGAAGATCGCCGAGCGGGTGCTCAAGGAGGTCAACGAGCGGCTGCGGTTCCTGGTCGACGTCGGC
CTGGACTACCTCTCGCTGAACCGCGCGGCCGGCACCCTCTCCGGCGGCGAGGCCCAGCGCATCCGGCTCGCCACCCAGAT
CGGCTCCGGACTCGTCGGCGTGCTGTACGTCCTGGACGAGCCGTCCATCGGTCTGCACCAGCGTGACAACCACCGGCTCA
TCGAGACGCTCGTCCGGCTCCGTGACATGGGCAACACCCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTGGCC
GACTGGGTCGTCGACATCGGTCCGGGCGCAGGCGAGCACGGCGGCAAGGTCGTGCACTCGGGCTCGCTGAAGGATCTGCT
CGCCAACAAGGCGTCGATCACCGGCCAGTACCTCGCCGGGAAGCGGTCCATCCCGACCCCCGACATCCGCCGGCCCATGG
ACCCGGGGCGGCAGCTCACCGTCCACGGCGCCCGTGAGAACAACCTGCGGGACATCGACGTCTCCTTCCCGCTCGGTGTC
CTGACCGCCGTCACCGGTGTCTCCGGCTCCGGCAAGTCGACCTTGGTCAACGACATCCTCTACACGCACCTGGCGCGTGA
GCTGAACGGCGCCAAGTCGGTGCCCGGCCGGCACACCCGCGTCGACGGCGACGACCTCGTCGACAAGGTCGTGCATGTCG
ACCAGTCGCCGATCGGCCGCACCCCGCGGTCGAACCCGGCGACGTACACCGGTGTCTTCGACCATGTCCGCAGGCTCTTC
GCCGAGACGATGGAGGCCAAGGTCCGGGGCTACCTCCCCGGCCGGTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGTTCGGGCGACGGCACCATCAAGATCGAGATGAACTTCCTTCCGGACGTGTACGTCCCGTGCGAGGTCTGCCACGGTG
CGCGTTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTGCTGGACATGCCGATCGAGGAG
GCCCTGGACTTCTTCGAGGCCGTCCCGACGATCTCCCGTCATCTGCGCACGCTCAACGAGGTCGGTCTCGGTTACGTCCG
CCTCGGCCAGTCCGCGCCGACGCTCTCCGGCGGTGAGGCCCAGCGGGTGAAGCTGGCGTCCGAGCTCCAGAAGCGCTCGA
CCGGCAGCACGGTGTACGTGCTCGACGAGCCGACGACCGGTCTGCACTTCGAGGACATCAGCAAGCTGATCAACGTGCTG
TCCGGGCTGGTCGACAAGGGGAACACGGTCATCGTCATCGAGCACAACCTCGATGTGATCAAGACCGCGGACTGGGTCGT
CGACATGGGACCGGAGGGTGGCAACGGCGGCGGGCTCGTCATCGCGGAGGGCACCCCGGAGCAGATCGCCGGGGTCCCGA
CCAGCCACACCGGCAAGTTCCTGCGGGACATCCTGGACACGGAGCGGATCAGCGACGCGGTGGTGCCGCAGGCGCGCTCG
GGCACCAGGAAGGCCGCGGCGAAGAAGCCCGCGACCACGGCCGCGGCGAACTCGGTCCCCACCGTGAAGGCGCCCGTCGC
CAAGAACACCGCGAAGAAGGCGGTGGCCAAGAAGACGGCGGCGAAGAAGACGGCGGCGAAGAAGACGGCGGCTCGCGCCC
GCAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

ABC transporter (ABC_tran)

(629-865)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

55.987

93.701

0.525
  uvrA Streptococcus pneumoniae TIGR4

55.987

93.701

0.525
  uvrA Streptococcus pneumoniae D39

55.987

93.701

0.525