Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG803_RS22765 Genome accession   NZ_CP107894
Coordinates   4973537..4974187 (-) Length   216 a.a.
NCBI ID   WP_313946214.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4968537..4979187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS22750 (OG803_22780) - 4969241..4970716 (+) 1476 WP_313946211.1 sodium:solute symporter -
  OG803_RS22755 (OG803_22785) speB 4970758..4971738 (+) 981 WP_313946212.1 agmatinase -
  OG803_RS22760 (OG803_22790) - 4971735..4973417 (+) 1683 WP_327684025.1 thiamine pyrophosphate-binding protein -
  OG803_RS22765 (OG803_22795) vraR 4973537..4974187 (-) 651 WP_313946214.1 response regulator transcription factor Regulator
  OG803_RS22770 (OG803_22800) - 4974192..4975367 (-) 1176 WP_327684028.1 histidine kinase -
  OG803_RS22775 (OG803_22805) - 4975475..4976409 (+) 935 Protein_4490 ATP-binding cassette domain-containing protein -
  OG803_RS22780 (OG803_22810) - 4976406..4977152 (+) 747 WP_327684030.1 ABC transporter permease -
  OG803_RS22785 (OG803_22815) - 4977213..4977554 (-) 342 WP_313946218.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22887.52 Da        Isoelectric Point: 4.9548

>NTDB_id=648203 OG803_RS22765 WP_313946214.1 4973537..4974187(-) (vraR) [Streptomyces sp. NBC_00467]
MPISVLLVDDEPLVRAGLRAVLEAQPDIEVTGEAADGAAVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVADPPKI
LVITTFENDEYVYEALRAGAAGFLLKRARPTEIVHAVRLVAEGESLLFPAAVRSLAAEYGSGTARAAMERAALTEREAAV
LRLMARGLTNAEIAAQLVVGTETVKTHVSAVLGKLGARDRTQAVIAAYESGFVTPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=648203 OG803_RS22765 WP_313946214.1 4973537..4974187(-) (vraR) [Streptomyces sp. NBC_00467]
GTGCCGATCTCCGTACTCCTCGTCGACGACGAACCCCTGGTCCGGGCGGGGCTGCGGGCCGTCCTGGAGGCGCAGCCGGA
CATCGAGGTGACCGGTGAGGCGGCCGACGGCGCGGCGGTGATACCGCTGGTGCGCCAACTGCGTCCCGATGTGGTGGCGA
TGGACGTCCGGATGCCCCTGCTCGACGGCATCGAGGCGACGCGCGCCGTGCTGCGGACGGTCGCCGACCCGCCGAAGATC
CTGGTCATCACGACCTTCGAGAACGACGAGTACGTCTACGAGGCCCTGCGTGCCGGCGCCGCGGGCTTTCTGCTCAAGCG
GGCCCGTCCCACCGAGATCGTGCACGCGGTCCGGCTCGTCGCGGAGGGCGAGTCGCTGCTCTTCCCGGCCGCGGTGCGTT
CGCTGGCCGCGGAGTACGGCAGCGGCACGGCCCGTGCGGCGATGGAGCGCGCCGCGCTGACCGAGCGGGAGGCGGCGGTG
CTGCGGTTGATGGCGCGCGGTCTGACGAACGCGGAGATCGCCGCGCAGCTGGTCGTCGGCACGGAGACGGTCAAGACCCA
TGTCAGCGCCGTACTGGGGAAGCTGGGGGCCCGCGACCGCACCCAGGCGGTCATTGCGGCGTACGAGTCGGGGTTCGTCA
CACCCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.455

100

0.412