Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7R07_RS17730 Genome accession   NZ_AP021946
Coordinates   3628058..3628663 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WP2-S18-ESBL-08     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3623058..3633663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R07_RS17710 (WP2S18E08_34520) aes 3623095..3624054 (+) 960 WP_000801813.1 acetyl esterase -
  H7R07_RS17715 (WP2S18E08_34530) hemH 3624051..3625013 (-) 963 WP_001250103.1 ferrochelatase -
  H7R07_RS17720 (WP2S18E08_34540) adk 3625249..3625893 (-) 645 WP_001220233.1 adenylate kinase -
  H7R07_RS17725 (WP2S18E08_34550) htpG 3626074..3627948 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  H7R07_RS17730 (WP2S18E08_34560) recR 3628058..3628663 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  H7R07_RS17735 (WP2S18E08_34570) ybaB 3628663..3628992 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  H7R07_RS17740 (WP2S18E08_34580) dnaX 3629045..3630976 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  H7R07_RS17745 (WP2S18E08_34590) apt 3631105..3631656 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  H7R07_RS17750 (WP2S18E08_34600) ybaN 3631809..3632186 (-) 378 WP_001188905.1 DUF454 family protein -
  H7R07_RS17755 (WP2S18E08_34610) priC 3632256..3632783 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  H7R07_RS17760 (WP2S18E08_34620) rsmS 3632797..3632958 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=64820 H7R07_RS17730 WP_001195025.1 3628058..3628663(-) (recR) [Escherichia coli strain WP2-S18-ESBL-08]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=64820 H7R07_RS17730 WP_001195025.1 3628058..3628663(-) (recR) [Escherichia coli strain WP2-S18-ESBL-08]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment