Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   L1776_RS17920 Genome accession   NZ_CP091174
Coordinates   3827377..3827934 (+) Length   185 a.a.
NCBI ID   WP_084898805.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain XX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3822377..3832934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1776_RS17895 speA 3822408..3824321 (-) 1914 WP_017245344.1 arginine decarboxylase -
  L1776_RS17900 - 3824444..3824815 (-) 372 WP_014595914.1 translation initiation factor Sui1 -
  L1776_RS17905 thiO 3824964..3826061 (-) 1098 WP_236450840.1 glycine oxidase ThiO -
  L1776_RS17910 - 3826215..3826709 (+) 495 WP_045159205.1 GspH/FimT family pseudopilin -
  L1776_RS17915 - 3826877..3827368 (+) 492 WP_236450841.1 GspH/FimT family pseudopilin -
  L1776_RS17920 pilV 3827377..3827934 (+) 558 WP_084898805.1 type IV pilus modification protein PilV Machinery gene
  L1776_RS17925 - 3827931..3828782 (+) 852 WP_045159203.1 PilW family protein -
  L1776_RS17930 - 3828779..3829384 (+) 606 WP_106442835.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20148.87 Da        Isoelectric Point: 4.5666

>NTDB_id=648169 L1776_RS17920 WP_084898805.1 3827377..3827934(+) (pilV) [Stutzerimonas stutzeri strain XX1]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAILLSGDLIEIIRAHPKELFNTSPPQFPMNSGLKS
SSMFYKEAGSDFIDRESCVASPTRIAQTAKELRDCWADKVEAALPGGAELFDSDTYICRSSTPGSCDGQGSMLEIHMAWQ
VREGACLDSSNTDDTVCTYTVRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=648169 L1776_RS17920 WP_084898805.1 3827377..3827934(+) (pilV) [Stutzerimonas stutzeri strain XX1]
ATGAAAACCAATAAAGGCTTCAGCCTGATCGAAGTGCTCGTAGCGCTACTGCTGACCACTATCGGAGTACTTGGAATGGT
GGCGCTGCAAGGCCGCAGCATCCAATACACCCAGGACTCCGTACAACGCAACACGGCCATTCTTCTGTCCGGAGACCTTA
TCGAAATCATACGGGCACACCCGAAAGAGCTTTTCAACACCTCCCCTCCACAGTTCCCCATGAACAGCGGGTTAAAAAGC
AGCTCGATGTTCTACAAGGAGGCCGGAAGCGATTTCATTGATCGTGAAAGCTGCGTCGCTAGCCCGACCCGAATAGCGCA
GACAGCAAAAGAGTTGCGTGACTGCTGGGCGGACAAGGTGGAAGCGGCGCTACCTGGCGGAGCCGAGCTGTTCGACAGCG
ATACCTACATCTGCCGAAGCTCCACGCCGGGCAGTTGCGACGGCCAGGGCTCGATGCTCGAGATTCATATGGCCTGGCAA
GTTCGAGAAGGCGCCTGTCTCGACTCGAGCAATACCGACGACACCGTCTGCACCTATACCGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.727

98.919

0.492