Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG803_RS08480 Genome accession   NZ_CP107894
Coordinates   1848792..1849577 (+) Length   261 a.a.
NCBI ID   WP_313943692.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843792..1854577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS08460 - 1843844..1844074 (+) 231 Protein_1686 RraA family protein -
  OG803_RS08465 - 1844103..1844549 (+) 447 WP_327679492.1 hypothetical protein -
  OG803_RS08470 (OG803_08480) - 1844657..1847539 (-) 2883 WP_327679494.1 vitamin B12-dependent ribonucleotide reductase -
  OG803_RS08475 (OG803_08485) nrdR 1847705..1848217 (-) 513 WP_313943691.1 transcriptional regulator NrdR -
  OG803_RS08480 (OG803_08490) dinR/lexA 1848792..1849577 (+) 786 WP_313943692.1 transcriptional repressor LexA Regulator
  OG803_RS08485 (OG803_08495) - 1849685..1851652 (-) 1968 WP_327679497.1 ATP-dependent DNA helicase -
  OG803_RS08490 (OG803_08500) - 1851696..1853603 (-) 1908 WP_327679499.1 IucA/IucC family siderophore biosynthesis protein -
  OG803_RS08495 (OG803_08505) - 1853663..1854400 (-) 738 WP_327679501.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28284.02 Da        Isoelectric Point: 8.0891

>NTDB_id=648161 OG803_RS08480 WP_313943692.1 1848792..1849577(+) (dinR/lexA) [Streptomyces sp. NBC_00467]
MTTTADSATITAQDRSQNRFEPVHAMNDAATTPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTSGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRENGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=648161 OG803_RS08480 WP_313943692.1 1848792..1849577(+) (dinR/lexA) [Streptomyces sp. NBC_00467]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGACCCCGGAGGGTCCCAAGCCGACGCGTTCACTGCCCGGCCGGCCCCCAGGGATCAGGGCGGACAGCT
CCGGGCTCACGGATCGGCAGCGGCGTGTCATCGAGGTGATCCGTGATTCCGTCCAGCGACGGGGTTACCCGCCGTCGATG
CGCGAGATCGGACAGGCCGTGGGCCTGTCCAGCACCTCTTCGGTCGCTCATCAGCTGATGGCGCTCGAGCGCAAGGGGTT
CCTGCGCCGGGACCCTCATCGGCCCAGGGCCTATGAGGTGCGCGGCTCCGACCAGCCCAGCACCCAGCCGACGGACACCA
GCGGCAAGCCCGCCGCGTCGTACGTCCCGCTGGTGGGGCGGATCGCGGCCGGTGGCCCGATCCTGGCCGAGGAGTCGGTC
GAGGACGTCTTCCCACTCCCCCGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGAT
CGAGGCCGCCATCTGTGACGGCGACTGGGTGACGGTGCGGCGCCAGCCCGTCGCGGAGAACGGCGACATCGTGGCAGCCA
TGCTCGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGGGAGAACGGCCACGTCTGGCTGCTCCCGCACAATGCGGCGTAC
CAGCCGATCCCCGGCGACGAAGCGACCATCCTCGGCAAGGTGGTGGCTGTGCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(54-117)

Peptidase S24-like (Peptidase_S24)

(143-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372