Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG803_RS06610 Genome accession   NZ_CP107894
Coordinates   1429695..1430366 (-) Length   223 a.a.
NCBI ID   WP_327678862.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424695..1435366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS06585 (OG803_06600) - 1424861..1425859 (-) 999 WP_327678855.1 sugar ABC transporter substrate-binding protein -
  OG803_RS06590 (OG803_06605) - 1426021..1426740 (-) 720 WP_327686704.1 GntR family transcriptional regulator -
  OG803_RS06595 (OG803_06610) - 1426896..1427900 (+) 1005 WP_327678857.1 Gfo/Idh/MocA family oxidoreductase -
  OG803_RS06600 (OG803_06615) - 1428000..1428419 (-) 420 WP_313943289.1 PaaI family thioesterase -
  OG803_RS06605 (OG803_06620) - 1428507..1429685 (-) 1179 WP_327678860.1 cytochrome P450 -
  OG803_RS06610 (OG803_06625) vraR 1429695..1430366 (-) 672 WP_327678862.1 response regulator transcription factor Regulator
  OG803_RS06615 (OG803_06630) - 1430363..1431592 (-) 1230 WP_327678864.1 histidine kinase -
  OG803_RS06620 (OG803_06635) - 1431739..1431951 (+) 213 WP_327678866.1 hypothetical protein -
  OG803_RS06625 (OG803_06640) - 1431994..1432368 (-) 375 WP_327678868.1 hypothetical protein -
  OG803_RS06630 (OG803_06645) - 1432405..1433019 (-) 615 WP_327678870.1 dihydrofolate reductase family protein -
  OG803_RS06635 (OG803_06650) - 1433251..1433979 (+) 729 WP_327678871.1 SDR family oxidoreductase -
  OG803_RS06640 (OG803_06655) alc 1434158..1435276 (-) 1119 WP_327686705.1 allantoicase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23787.24 Da        Isoelectric Point: 4.8493

>NTDB_id=648156 OG803_RS06610 WP_327678862.1 1429695..1430366(-) (vraR) [Streptomyces sp. NBC_00467]
MTIRLLVVDDDPLVRAGLSFMLGGADGLEIVGEGADGSEVPELIDRLSPDVVLMDIRMPTVDGLRATEELRRRPDAPEVV
VLTTFHADEQVLRALRAGAAGFVLKDTPPAEIVAAVRRVASGDPVLSPAVTRQLMSHVADRVPDSRRGTAAQRLDSLAER
EREVAVAVGRGQSNAEIAATLYMSVPTVKTHVSRILAKLDLNNRVQIALLAHDAGLLDGEGPT

Nucleotide


Download         Length: 672 bp        

>NTDB_id=648156 OG803_RS06610 WP_327678862.1 1429695..1430366(-) (vraR) [Streptomyces sp. NBC_00467]
ATGACTATCCGGTTGCTCGTCGTCGATGACGACCCCTTGGTCCGAGCCGGCCTCTCCTTCATGCTCGGCGGGGCCGACGG
CCTCGAGATCGTCGGGGAGGGCGCGGACGGTTCCGAGGTACCGGAACTGATCGACCGGCTCTCGCCCGACGTCGTGCTGA
TGGACATCCGGATGCCGACGGTGGACGGACTGCGCGCCACCGAGGAGCTGCGGCGCAGGCCCGACGCCCCCGAGGTCGTG
GTGCTCACCACGTTCCACGCGGACGAGCAGGTGCTGCGGGCGCTGCGGGCCGGGGCGGCCGGGTTCGTCCTCAAGGACAC
CCCGCCGGCCGAGATCGTCGCCGCGGTGCGGCGGGTCGCCTCCGGGGACCCGGTGCTCTCCCCGGCCGTGACCCGCCAGC
TGATGTCGCACGTTGCCGACCGGGTGCCCGACTCGCGCCGCGGCACGGCGGCCCAGCGGCTGGACTCGCTCGCGGAACGG
GAGCGGGAGGTGGCGGTCGCGGTGGGCCGCGGCCAGTCCAACGCGGAGATCGCGGCGACGCTGTACATGAGCGTGCCGAC
CGTGAAGACCCATGTGTCCCGCATCCTCGCGAAGCTGGATCTCAACAACCGTGTCCAGATCGCGCTGCTCGCGCACGACG
CGGGCCTGCTGGACGGGGAGGGGCCGACGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-211)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.327

97.309

0.363