Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG803_RS01590 Genome accession   NZ_CP107894
Coordinates   335925..336614 (-) Length   229 a.a.
NCBI ID   WP_327677159.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 330925..341614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS01555 (OG803_01570) - 331292..331624 (+) 333 WP_327677144.1 hypothetical protein -
  OG803_RS01560 (OG803_01575) - 331676..332209 (+) 534 WP_327677146.1 GNAT family protein -
  OG803_RS01565 (OG803_01580) - 332272..332880 (-) 609 WP_327677149.1 GPP34 family phosphoprotein -
  OG803_RS01570 (OG803_01585) - 333154..334416 (+) 1263 WP_327677151.1 serine hydrolase domain-containing protein -
  OG803_RS01575 (OG803_01590) - 334518..334814 (+) 297 WP_327677153.1 hypothetical protein -
  OG803_RS01580 (OG803_01595) - 334811..335380 (+) 570 WP_327677155.1 hypothetical protein -
  OG803_RS01585 (OG803_01600) - 335574..335786 (+) 213 WP_327677157.1 hypothetical protein -
  OG803_RS01590 (OG803_01605) dinR/lexA 335925..336614 (-) 690 WP_327677159.1 transcriptional repressor LexA Regulator
  OG803_RS01595 (OG803_01610) - 337102..337788 (-) 687 WP_327677161.1 DNA alkylation repair protein -
  OG803_RS01600 (OG803_01615) - 337902..339086 (-) 1185 WP_327677163.1 MFS transporter -
  OG803_RS01605 (OG803_01620) - 339355..340530 (-) 1176 WP_327677165.1 Cmx/CmrA family chloramphenicol efflux MFS transporter -
  OG803_RS01610 (OG803_01625) - 340860..341378 (+) 519 WP_327677167.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24914.28 Da        Isoelectric Point: 9.6108

>NTDB_id=648152 OG803_RS01590 WP_327677159.1 335925..336614(-) (dinR/lexA) [Streptomyces sp. NBC_00467]
MHADEPARRGRPPGGQTDADGLTSRQAAVVNFIEQTVARKGYPPSMREIGEAVNLRSTSSVAHQLMTLERKGFVERDPHR
PRAYRVRRRLSSDSGPAPAPTRTQGHTADVPLLGRIAAGPPILADESVEDVLTLPRQLVGEGELFALTVVGDSMIDAAIR
DGDIVTVRRQQTADHGDTVAALLDGEATVKRLHREAGEVWLMPANPAYQPLRGDQARILGKVVALMRRF

Nucleotide


Download         Length: 690 bp        

>NTDB_id=648152 OG803_RS01590 WP_327677159.1 335925..336614(-) (dinR/lexA) [Streptomyces sp. NBC_00467]
ATGCATGCAGACGAACCAGCGCGCCGGGGGCGCCCGCCGGGCGGGCAGACGGACGCGGACGGTTTGACGAGCAGGCAGGC
CGCCGTGGTGAACTTCATCGAGCAGACCGTGGCCCGCAAGGGATACCCGCCGTCGATGCGTGAGATCGGCGAAGCGGTGA
ACCTCAGGTCGACGTCGTCGGTCGCGCATCAGCTGATGACGCTGGAACGCAAGGGCTTCGTCGAACGTGACCCGCATCGC
CCCCGCGCCTACCGGGTCCGCAGACGCCTCAGCTCCGACTCCGGCCCGGCGCCCGCCCCGACCCGTACGCAGGGGCACAC
GGCCGATGTGCCGCTTCTGGGACGCATCGCGGCCGGCCCCCCGATCCTCGCCGACGAATCCGTCGAGGACGTCCTGACCC
TGCCGAGGCAACTGGTCGGCGAGGGCGAGCTGTTCGCCCTGACCGTGGTCGGCGACAGCATGATCGACGCCGCGATCCGC
GACGGCGACATCGTCACCGTCCGCCGCCAGCAGACAGCCGACCACGGTGACACGGTGGCGGCCCTCCTCGACGGCGAAGC
GACCGTGAAGCGTCTCCACCGTGAAGCAGGCGAAGTCTGGCTGATGCCGGCGAACCCGGCCTACCAGCCGCTGCGCGGCG
ACCAGGCACGGATCCTCGGCAAGGTTGTGGCACTCATGCGACGCTTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(111-223)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

42.788

90.83

0.389