Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHV16_RS24770 Genome accession   NZ_CP107889
Coordinates   5466140..5466808 (-) Length   222 a.a.
NCBI ID   WP_327662300.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00470     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5461140..5471808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHV16_RS24770 (OHV16_24805) vraR 5466140..5466808 (-) 669 WP_327662300.1 response regulator transcription factor Regulator
  OHV16_RS24775 (OHV16_24810) - 5466805..5468061 (-) 1257 WP_327671091.1 histidine kinase -
  OHV16_RS24780 (OHV16_24815) - 5468120..5468905 (-) 786 WP_327671092.1 ABC transporter permease -
  OHV16_RS24785 (OHV16_24820) - 5468902..5469864 (-) 963 WP_327671093.1 ATP-binding cassette domain-containing protein -
  OHV16_RS24790 (OHV16_24825) - 5469970..5470518 (+) 549 WP_327671094.1 N-acetyltransferase -
  OHV16_RS24795 (OHV16_24830) - 5470515..5471117 (-) 603 WP_327671095.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23834.35 Da        Isoelectric Point: 4.8245

>NTDB_id=648100 OHV16_RS24770 WP_327662300.1 5466140..5466808(-) (vraR) [Streptomyces sp. NBC_00470]
MTTVLIVDDQPMQRFGFRMLLESQDDLRVAGEAGTGTEAVRLAAELAPDVVLMDIRMPGMDGIEATRRITASGPEGPRIL
ILTTFDMDEYAYAGLRAGASGFLIKDALPEELLAGIRAVAAGDAIVAPSLTRRLLDAYVHHLPADAGTPPAADPRIASLT
DREREILTVIAQGWSNSEIAQRLHLAESTVKTHVSRILAKTGARDRVQAVIVAYDAKLVEPA

Nucleotide


Download         Length: 669 bp        

>NTDB_id=648100 OHV16_RS24770 WP_327662300.1 5466140..5466808(-) (vraR) [Streptomyces sp. NBC_00470]
GTGACGACCGTCCTCATCGTCGACGACCAGCCCATGCAGCGCTTCGGCTTCCGCATGCTCCTGGAGAGCCAGGACGACCT
ACGGGTCGCGGGCGAGGCGGGCACGGGCACGGAGGCGGTCCGCCTCGCGGCCGAGCTCGCCCCCGACGTGGTCCTGATGG
ACATCCGCATGCCCGGCATGGACGGCATCGAGGCGACTCGCCGCATCACCGCCTCGGGCCCCGAGGGCCCGCGCATCCTG
ATCCTCACCACGTTCGACATGGACGAGTACGCGTACGCGGGCCTGCGGGCCGGAGCCTCCGGCTTCCTCATCAAGGACGC
ACTCCCCGAGGAACTCCTGGCAGGCATCCGCGCGGTGGCCGCCGGCGACGCGATCGTCGCCCCCAGCCTGACCCGCCGCC
TCCTGGACGCGTACGTCCACCATCTCCCGGCGGACGCGGGTACTCCCCCGGCTGCCGATCCACGCATCGCCTCCCTCACG
GACCGCGAACGCGAGATCCTCACGGTCATCGCCCAGGGCTGGAGCAATTCGGAAATCGCTCAGCGCCTGCACCTCGCGGA
ATCGACGGTGAAGACCCATGTCTCCCGCATTCTGGCGAAGACGGGGGCGCGGGACAGAGTGCAGGCGGTGATCGTGGCGT
ACGACGCGAAACTGGTGGAGCCCGCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.788

97.748

0.369