Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L2Y01_RS04785 Genome accession   NZ_CP091147
Coordinates   1036519..1037886 (+) Length   455 a.a.
NCBI ID   WP_003381736.1    Uniprot ID   Q0EDX1
Organism   Pseudomonas avellanae strain NCPPB 4222     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1031519..1042886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y01_RS04775 (L2Y01_04775) ltrA 1034247..1035530 (+) 1284 WP_249741594.1 group II intron reverse transcriptase/maturase -
  L2Y01_RS04780 (L2Y01_04780) mscL 1035878..1036324 (-) 447 WP_005620570.1 large-conductance mechanosensitive channel protein MscL -
  L2Y01_RS04785 (L2Y01_04785) radA 1036519..1037886 (+) 1368 WP_003381736.1 DNA repair protein RadA Machinery gene
  L2Y01_RS04790 (L2Y01_04790) - 1037907..1038275 (-) 369 WP_005620567.1 PilZ domain-containing protein -
  L2Y01_RS04795 (L2Y01_04795) - 1038562..1040637 (+) 2076 WP_017683110.1 carbon starvation CstA family protein -
  L2Y01_RS04800 (L2Y01_04800) - 1040665..1040862 (+) 198 WP_002555232.1 YbdD/YjiX family protein -
  L2Y01_RS04805 (L2Y01_04805) yjiA 1040958..1041935 (+) 978 WP_003381732.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48839.40 Da        Isoelectric Point: 7.1315

>NTDB_id=648033 L2Y01_RS04785 WP_003381736.1 1036519..1037886(+) (radA) [Pseudomonas avellanae strain NCPPB 4222]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGAAAPPSGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=648033 L2Y01_RS04785 WP_003381736.1 1036519..1037886(+) (radA) [Pseudomonas avellanae strain NCPPB 4222]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACATTTCCCAAGTGGGCGGGCCAGTGTGCTGATTG
CGGCGCCTGGAACACACTGGTCGAAACCATGATAGAAAGCGGTGCCGCAGCGCCTCCCAGCGGGCGCACCGGCTGGACCG
GCTCACAGGCGCAGATCAGAACCCTGGCTGAAGTCAGCGTTGAAGAGATCCCGCGGTTTTCCACCAACTCCGCCGAACTC
GACAGAGTGCTCGGTGGCGGTCTGGTGGATGGTTCTGTGGTGCTGATCGGCGGCGACCCTGGCATCGGCAAGTCGACAAT
TCTGTTGCAAACGCTGTGTAACATCGCCCAGCGCATGCCTGCGCTGTATGTCACCGGCGAGGAATCCCAACAGCAGGTGG
CCATGCGCGCCCGCCGTCTGGGCCTGCCGCAGGACAAACTGCGGGTCATGACCGAAACCTGCATCGAAACAATTATTGCC
ACCGCCAAGGTCGAGAAGCCCAAGGTAATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAATTGCAGTCCGCACC
GGGTGGCGTGTCGCAAGTGCGCGAAAGCGCCGCCTTGCTGGTGCGCTACGCCAAGCAGAGTGGCACCGCGATTTTCCTGG
TGGGGCATGTCACCAAGGAAGGCGCACTGGCGGGGCCGCGTGTGCTTGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGCGAGTCGGACGGTCGTCTGCGTTTGCTGCGCGCCGTAAAGAACCGTTTCGGCGCGGTAAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTGTCCAATCCGTCGGCGATTTTTCTGACCCGTGCGCAGGAAGAAGTCCCCGGCA
GCGTGGTCATGGCCACATGGGAAGGCACCCGGCCGATGCTGGTCGAAGTTCAGGCGCTAGTGGATGACAGCCATATGTCC
AATCCGCGTCGTGTGACCCTGGGCCTGGATCAGAACCGTCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAAGTGCTGGAAACCGCGTCGGACCTGGCGTTGA
TGGCCGCTGTCATGTCCAGCCTGCGCAATCGCCCGCTGCCGCATGACTTGCTGGTGTTTGGCGAGGTGGGGCTGTCGGGT
GAGGTCAGGCCGGTACCCAGCGGGCAGGAGCGCCTGAAAGAGGCCGCCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
AGGCAACGCGCCGAAAGAAGCGCCTCCCGGTCTGCAGATCATTGCCGTCACGCGTCTGGAACAGGCGCTGGATGCTTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0EDX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468