Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG889_RS25915 Genome accession   NZ_CP107882
Coordinates   5964871..5965869 (+) Length   332 a.a.
NCBI ID   WP_326582145.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00481     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5959871..5970869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG889_RS25890 (OG889_25930) - 5960049..5961599 (+) 1551 WP_326582141.1 MFS transporter -
  OG889_RS25895 (OG889_25935) - 5961954..5962460 (-) 507 WP_326582142.1 MarR family transcriptional regulator -
  OG889_RS25900 (OG889_25940) - 5962669..5963454 (+) 786 WP_326582143.1 class III extradiol ring-cleavage dioxygenase -
  OG889_RS25905 (OG889_25945) - 5963800..5964147 (+) 348 WP_326585783.1 DUF1330 domain-containing protein -
  OG889_RS25910 (OG889_25950) - 5964159..5964677 (-) 519 WP_326582144.1 GNAT family N-acetyltransferase -
  OG889_RS25915 (OG889_25955) rpoS 5964871..5965869 (+) 999 WP_326582145.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG889_RS25920 (OG889_25960) - 5966534..5967508 (-) 975 WP_326582146.1 YafY family protein -
  OG889_RS25925 (OG889_25965) - 5967611..5969185 (+) 1575 WP_326582147.1 MFS transporter -
  OG889_RS25930 (OG889_25970) - 5969451..5970302 (+) 852 WP_326582148.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37159.84 Da        Isoelectric Point: 4.9607

>NTDB_id=648023 OG889_RS25915 WP_326582145.1 5964871..5965869(+) (rpoS) [Streptomyces sp. NBC_00481]
MATRAVAARRSSASGRTDAARSVRASGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQILDGEEAARAD
ATREELEALVADSERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPQEIAAELGSNADRVVDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAVA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=648023 OG889_RS25915 WP_326582145.1 5964871..5965869(+) (rpoS) [Streptomyces sp. NBC_00481]
ATGGCAACCCGTGCCGTCGCCGCTCGTCGTTCGTCCGCCTCCGGCCGGACCGACGCGGCTCGCAGCGTTCGCGCCTCTGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCGGGTGTGTTCGCGCAGCAGATCCTCGACGGCGAGGAGGCGGCCAGGGCGGAC
GCCACCCGCGAAGAGCTCGAGGCCCTCGTCGCGGACAGCGAGCGGGCCAAGGACATCTTCATCCGGTCGAACCTGCGGCT
CGTCGTGGCGGTCGCCCGGCGTTATCCGCGCAGTGGCCTGCCCCTGCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCGATAGCGGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTAGTCGAGGAACTGGGCCGGATCCGCCGCGT
GCAGCGCGAGTTCAACCGCGAGCACGGGCGCGACCCCGAGCCCCAGGAGATCGCCGCCGAACTCGGTTCCAACGCGGACC
GCGTCGTCGACGTCCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGGCGCCTCGACCAGCGCACCGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGGACCC
TCACCGAGGTCGGCAAGGAGCACGGGCTCACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTCGAACTGAAG
AAGCTCGCCCGCGACACGGGCTTCGACGCCGTCGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70, region 4 (Sigma70_r4)

(269-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364