Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L2Y00_RS15690 Genome accession   NZ_CP091143
Coordinates   3479855..3481222 (-) Length   455 a.a.
NCBI ID   WP_003381736.1    Uniprot ID   Q0EDX1
Organism   Pseudomonas avellanae strain NCPPB 3491     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3474855..3486222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y00_RS15670 (L2Y00_15670) yjiA 3475806..3476783 (-) 978 WP_003381732.1 GTPase -
  L2Y00_RS15675 (L2Y00_15675) - 3476879..3477076 (-) 198 WP_002555232.1 YbdD/YjiX family protein -
  L2Y00_RS15680 (L2Y00_15680) - 3477104..3479179 (-) 2076 WP_017683110.1 carbon starvation CstA family protein -
  L2Y00_RS15685 (L2Y00_15685) - 3479466..3479834 (+) 369 WP_005620567.1 PilZ domain-containing protein -
  L2Y00_RS15690 (L2Y00_15690) radA 3479855..3481222 (-) 1368 WP_003381736.1 DNA repair protein RadA Machinery gene
  L2Y00_RS15695 (L2Y00_15695) mscL 3481417..3481863 (+) 447 WP_005620570.1 large-conductance mechanosensitive channel protein MscL -
  L2Y00_RS15700 (L2Y00_15700) ltrA 3482211..3483494 (-) 1284 WP_024421475.1 group II intron reverse transcriptase/maturase -
  L2Y00_RS15705 (L2Y00_15705) - 3484102..3484878 (-) 777 WP_005620572.1 ferredoxin--NADP reductase -
  L2Y00_RS15710 (L2Y00_15710) - 3485216..3485449 (+) 234 WP_003381740.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48839.40 Da        Isoelectric Point: 7.1315

>NTDB_id=648005 L2Y00_RS15690 WP_003381736.1 3479855..3481222(-) (radA) [Pseudomonas avellanae strain NCPPB 3491]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGAAAPPSGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=648005 L2Y00_RS15690 WP_003381736.1 3479855..3481222(-) (radA) [Pseudomonas avellanae strain NCPPB 3491]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACATTTCCCAAGTGGGCGGGCCAGTGTGCTGATTG
CGGCGCCTGGAACACACTGGTCGAAACCATGATAGAAAGCGGTGCCGCAGCGCCTCCCAGCGGGCGCACCGGCTGGACCG
GCTCACAGGCGCAGATCAGAACCCTGGCTGAAGTCAGCGTTGAAGAGATCCCGCGGTTTTCCACCAACTCCGCCGAACTC
GACAGAGTGCTCGGTGGCGGTCTGGTGGATGGTTCTGTGGTGCTGATCGGCGGCGACCCTGGCATCGGCAAGTCGACAAT
TCTGTTGCAAACGCTGTGTAACATCGCCCAGCGCATGCCTGCGCTGTATGTCACCGGCGAGGAATCCCAACAGCAGGTGG
CCATGCGCGCCCGCCGTCTGGGCCTGCCGCAGGACAAACTGCGGGTCATGACCGAAACCTGCATCGAAACAATTATTGCC
ACCGCCAAGGTCGAGAAGCCCAAGGTAATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAATTGCAGTCCGCACC
GGGTGGCGTGTCGCAAGTGCGCGAAAGCGCCGCCTTGCTGGTGCGCTACGCCAAGCAGAGTGGCACCGCGATTTTCCTGG
TGGGGCATGTCACCAAGGAAGGCGCACTGGCGGGGCCGCGTGTGCTTGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGCGAGTCGGACGGTCGTCTGCGTTTGCTGCGCGCCGTAAAGAACCGTTTCGGCGCGGTAAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTGTCCAATCCGTCGGCGATTTTTCTGACCCGTGCGCAGGAAGAAGTCCCCGGCA
GCGTGGTCATGGCCACATGGGAAGGCACCCGGCCGATGCTGGTCGAAGTTCAGGCGCTAGTGGATGACAGCCATATGTCC
AATCCGCGTCGTGTGACCCTGGGCCTGGATCAGAACCGTCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAAGTGCTGGAAACCGCGTCGGACCTGGCGTTGA
TGGCCGCTGTCATGTCCAGCCTGCGCAATCGCCCGCTGCCGCATGACTTGCTGGTGTTTGGCGAGGTGGGGCTGTCGGGT
GAGGTCAGGCCGGTACCCAGCGGGCAGGAGCGCCTGAAAGAGGCCGCCAAGCACGGCTTCAAACGGGCCATCGTGCCCAA
AGGCAACGCGCCGAAAGAAGCGCCTCCCGGTCTGCAGATCATTGCCGTCACGCGTCTGGAACAGGCGCTGGATGCTTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0EDX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468