Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG889_RS01095 Genome accession   NZ_CP107882
Coordinates   263989..265011 (-) Length   340 a.a.
NCBI ID   WP_326585470.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00481     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 258989..270011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG889_RS01080 (OG889_01085) - 259709..261469 (+) 1761 WP_326573421.1 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein -
  OG889_RS01085 (OG889_01090) - 261466..262302 (+) 837 WP_326573423.1 ATP-binding cassette domain-containing protein -
  OG889_RS01090 (OG889_01095) - 262367..263887 (-) 1521 WP_326573425.1 glycoside hydrolase family 43 protein -
  OG889_RS01095 (OG889_01100) cytR 263989..265011 (-) 1023 WP_326585470.1 LacI family DNA-binding transcriptional regulator Regulator
  OG889_RS01100 (OG889_01105) - 265231..266970 (+) 1740 WP_326573427.1 cellulase family glycosylhydrolase -
  OG889_RS01105 (OG889_01110) - 267409..267729 (+) 321 WP_326573429.1 hypothetical protein -
  OG889_RS01110 (OG889_01115) - 267735..268433 (+) 699 WP_326573431.1 helix-turn-helix domain-containing protein -
  OG889_RS01115 (OG889_01120) - 268632..269276 (+) 645 WP_326585471.1 DNA alkylation repair protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36773.59 Da        Isoelectric Point: 4.9122

>NTDB_id=647979 OG889_RS01095 WP_326585470.1 263989..265011(-) (cytR) [Streptomyces sp. NBC_00481]
MDRNDGQGDKSRPVTIAFIAESAGVSVPTVSKVINGKSGVSADTRARVEELVNRYGYRKPTGANRNNVVELVFRELKHMW
AVEIIRGVERVARQHRVGVMVSEFGLHDADLPTWDDTVSRRPNCVLSVAQLSEAEREQLKAKGIPFVVFDPATELPDDVP
FVGATNWSGGRAATRHLTELGHRRIAMISGPEDQLYCCARLDGYRSAMQSAGLPVDPELVTYAPLTSEDGYEAARSLLDL
PERPTAIFTANDLQALGVYQAAREAGLRIPDDLSVVGFDDLPVVAWVDPPLTTVHQPLTEMAVAATELALTLGRGEDAPQ
AGLEIATTLTVRASTAPPKG

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=647979 OG889_RS01095 WP_326585470.1 263989..265011(-) (cytR) [Streptomyces sp. NBC_00481]
GTGGACAGGAACGACGGGCAGGGCGACAAGTCCCGGCCGGTCACGATCGCGTTCATCGCCGAGTCGGCGGGGGTGTCGGT
TCCCACCGTGTCCAAGGTGATCAACGGCAAGTCCGGCGTCTCCGCGGACACGCGGGCGCGTGTCGAGGAGCTGGTCAACA
GGTACGGCTACCGCAAGCCGACGGGTGCCAACCGGAACAACGTCGTGGAGCTCGTGTTCCGCGAGCTCAAGCACATGTGG
GCCGTCGAGATCATCCGGGGTGTCGAGCGGGTGGCCCGTCAGCACCGCGTGGGCGTCATGGTCTCCGAGTTCGGGCTGCA
CGACGCGGACCTGCCCACCTGGGACGACACCGTCTCCCGACGGCCGAACTGCGTGCTGTCCGTGGCCCAGCTCTCCGAGG
CCGAGCGGGAGCAGCTGAAGGCCAAGGGCATCCCCTTCGTCGTCTTCGACCCGGCCACGGAACTGCCGGACGACGTCCCG
TTCGTGGGCGCCACCAACTGGTCCGGCGGCCGGGCCGCCACCCGCCACCTCACCGAACTCGGGCACCGCCGCATCGCCAT
GATCAGCGGCCCCGAGGACCAGCTGTACTGCTGCGCCCGGCTGGACGGATACCGCTCCGCGATGCAGTCCGCCGGCCTGC
CGGTCGATCCCGAACTCGTCACGTACGCGCCGCTCACCAGTGAGGACGGCTACGAGGCGGCGCGCTCCCTGCTGGATCTG
CCGGAGCGCCCGACGGCGATATTCACCGCCAACGACCTGCAGGCACTCGGTGTCTACCAGGCGGCGCGCGAGGCCGGTCT
GCGGATCCCCGACGACCTGAGCGTCGTCGGATTCGACGACCTGCCGGTCGTGGCCTGGGTGGATCCGCCCCTGACCACCG
TTCACCAGCCCCTGACCGAGATGGCCGTGGCCGCGACCGAGCTGGCGCTCACGCTCGGGCGCGGCGAGGACGCACCCCAG
GCCGGGCTGGAGATCGCGACGACCCTGACGGTCCGGGCCAGCACGGCCCCGCCGAAGGGCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-335)

Bacterial regulatory proteins, lacI family (LacI)

(16-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.657

100

0.368