Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA73_RS38575 Genome accession   NZ_CP107880
Coordinates   8637778..8638440 (+) Length   220 a.a.
NCBI ID   WP_327657456.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8632778..8643440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS38555 (OHA73_38555) - 8633767..8634477 (+) 711 WP_266723240.1 spermidine synthase -
  OHA73_RS38560 (OHA73_38560) - 8634581..8635444 (-) 864 WP_327657455.1 ABC transporter permease -
  OHA73_RS38565 (OHA73_38565) - 8635441..8636349 (-) 909 WP_267068114.1 ATP-binding cassette domain-containing protein -
  OHA73_RS38570 (OHA73_38570) - 8636483..8637781 (+) 1299 WP_267068113.1 sensor histidine kinase -
  OHA73_RS38575 (OHA73_38575) vraR 8637778..8638440 (+) 663 WP_327657456.1 response regulator transcription factor Regulator
  OHA73_RS38580 (OHA73_38580) - 8638956..8639651 (+) 696 WP_327657457.1 DUF998 domain-containing protein -
  OHA73_RS38585 (OHA73_38585) - 8639681..8640979 (+) 1299 WP_327657458.1 histidine kinase -
  OHA73_RS38590 (OHA73_38590) vraR 8640982..8641680 (+) 699 WP_327657459.1 response regulator transcription factor Regulator
  OHA73_RS38595 (OHA73_38595) - 8642057..8642281 (+) 225 WP_327657460.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23579.13 Da        Isoelectric Point: 4.4179

>NTDB_id=647964 OHA73_RS38575 WP_327657456.1 8637778..8638440(+) (vraR) [Streptomyces sp. NBC_00483]
MTIRVVLADDQPLVRAALQMVITDTTDVQVVGEAADGAEAVRLAGELTPDVVVMDIRMPGMDGIEATRLITTGPGTARIV
VLTTFDEDDHVYGALRAGASGFLVKDMDLDDILAAVRIVAAGDALIAPSVTRRLIKEFADRPTATAPPRRTELERITQRE
REVLTLVGNGLSNAEIADELSISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLVAPSY

Nucleotide


Download         Length: 663 bp        

>NTDB_id=647964 OHA73_RS38575 WP_327657456.1 8637778..8638440(+) (vraR) [Streptomyces sp. NBC_00483]
ATGACCATCCGCGTGGTACTCGCCGACGACCAGCCCTTGGTCCGCGCCGCCCTGCAGATGGTCATCACCGACACCACGGA
CGTCCAGGTCGTGGGCGAGGCCGCTGACGGCGCCGAAGCGGTCCGACTGGCCGGGGAACTCACCCCCGACGTAGTGGTGA
TGGACATCCGGATGCCCGGCATGGACGGCATCGAAGCCACCCGCCTGATCACCACGGGCCCCGGCACCGCACGCATTGTT
GTGCTGACGACCTTCGACGAGGACGACCACGTCTATGGGGCGCTGCGCGCCGGCGCATCCGGATTCCTGGTCAAGGACAT
GGACTTGGACGACATCCTCGCCGCGGTCCGCATCGTGGCCGCCGGCGACGCCCTCATCGCACCGAGCGTCACCCGCAGAC
TGATAAAGGAGTTCGCCGACCGCCCCACGGCAACAGCGCCGCCACGACGGACAGAGCTCGAGCGCATCACCCAGCGGGAA
CGCGAGGTGCTCACCCTGGTCGGCAACGGCCTCTCCAACGCCGAAATCGCCGACGAGCTCTCCATCAGCGTCGCCACCGC
CAAGACCTATCTGACCCGGCTCCTCGCCAAGCTCGACGCACGTGACCGGGTGCAACTCGTGATCCTCGCTTACGAAGCGG
GGCTGGTGGCACCGTCCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.788

98.636

0.373