Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L1879_RS13815 Genome accession   NZ_CP091131
Coordinates   2855748..2857451 (+) Length   567 a.a.
NCBI ID   WP_061575201.1    Uniprot ID   A0A150KCE6
Organism   Heyndrickxia coagulans strain TM3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2850748..2862451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS13790 - 2851145..2851372 (+) 228 WP_013859605.1 exodeoxyribonuclease VII small subunit -
  L1879_RS13795 - 2851375..2852244 (+) 870 WP_258921455.1 polyprenyl synthetase family protein -
  L1879_RS13800 dxs 2852391..2854292 (+) 1902 WP_258921456.1 1-deoxy-D-xylulose-5-phosphate synthase -
  L1879_RS13805 - 2854293..2855117 (+) 825 WP_258921457.1 TlyA family RNA methyltransferase -
  L1879_RS13810 argR 2855281..2855730 (+) 450 WP_035187997.1 transcriptional regulator ArgR -
  L1879_RS13815 recN 2855748..2857451 (+) 1704 WP_061575201.1 DNA repair protein RecN Machinery gene
  L1879_RS13820 spoIVB 2857631..2858914 (+) 1284 WP_258921458.1 SpoIVB peptidase -
  L1879_RS13825 spo0A 2859081..2859866 (+) 786 WP_258921459.1 sporulation transcription factor Spo0A -
  L1879_RS13830 - 2859985..2860728 (+) 744 WP_061565220.1 glycerophosphodiester phosphodiesterase -
  L1879_RS13835 - 2860738..2860980 (-) 243 WP_258921460.1 DUF2627 domain-containing protein -
  L1879_RS13840 - 2861114..2861533 (+) 420 WP_258921461.1 Fis family transcriptional regulator -
  L1879_RS13845 - 2861578..2861730 (+) 153 WP_258921462.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64438.34 Da        Isoelectric Point: 4.8928

>NTDB_id=647955 L1879_RS13815 WP_061575201.1 2855748..2857451(+) (recN) [Heyndrickxia coagulans strain TM3]
MLQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRGSSEFVRHGENRAEIEGLFLVEDGHPCMERA
REFGIEIEEGMVILRRDISKTGKSVCRINGKLVTISVLREIGSTLIDIHSQHETQELLNETYHLPLLDQYGQSEIETALL
DYEKLYKKYEAVYGRLKRMNENDQQLAQRLDLIQFQHEEIQNAGLRLHEDEELAEEKRKLVNFERLFESLNTGYEALAGE
QHGLDWLSLAMSHLETAAEVDGGLSDILESVQSCFYTLEDMSRSIRSRLDGLEFDPERLNVIEARLNEINQLKRKYGSTI
EEILEYGSKIEEEIESIVNRDHHVELLQKELQTVKRDLYLEAKQLSDLRKKWAGKLTENIHSELKQLYMDKTKFEVRFLA
AADDYYEADDIPFRRDGLDQVEFYISTNPGEPLKPLAKTASGGELSRIMLALKTIFSRHQGITSVIFDEVDTGVSGRVAQ
AIAEKIYHISVHSQVLCITHLPQVAAMADTHLLIMKETEKGRTRTKVKPLGQEEKIKEIGRMISGVEMTELTRQHAKELL
ELAEAIK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=647955 L1879_RS13815 WP_061575201.1 2855748..2857451(+) (recN) [Heyndrickxia coagulans strain TM3]
TTGCTGCAGGAATTATCGATTAAAAATTTTGCCATTATTGATGCGCTAACCCTCTCATTTGAAGCCGGGCTGACTGTCCT
GACAGGGGAGACCGGTGCCGGCAAATCGATTATTATCGATGCGATCCAGCTTTTAACAGGCGGGAGAGGGTCATCGGAGT
TTGTCCGGCACGGGGAAAACCGTGCTGAGATTGAGGGTTTATTTCTGGTCGAAGACGGCCATCCGTGTATGGAGCGCGCC
CGCGAATTCGGCATTGAGATTGAGGAAGGCATGGTGATTTTGCGGCGCGATATATCGAAAACAGGGAAAAGCGTCTGCCG
CATCAACGGAAAACTTGTGACGATTTCGGTGCTGCGCGAAATCGGGTCGACTTTAATTGATATCCACAGCCAGCACGAAA
CGCAGGAACTGCTGAACGAAACGTACCATCTGCCGCTGCTTGACCAGTACGGGCAAAGCGAGATCGAAACGGCCCTCCTT
GATTACGAAAAATTATATAAAAAATACGAAGCCGTTTACGGGCGGTTAAAAAGAATGAATGAAAACGACCAGCAGCTTGC
CCAGCGCCTTGACCTCATCCAGTTCCAGCATGAGGAAATCCAAAACGCAGGGCTGAGGCTGCATGAAGACGAGGAGTTAG
CGGAAGAAAAACGAAAACTCGTCAATTTTGAACGGCTGTTTGAATCATTGAACACGGGGTATGAAGCGCTTGCCGGGGAA
CAGCACGGCCTCGACTGGCTCAGCCTTGCCATGAGCCATCTTGAAACCGCGGCCGAAGTGGATGGCGGGCTCTCTGACAT
TTTGGAATCCGTCCAAAGTTGTTTTTATACGCTCGAAGACATGTCCCGCTCGATCCGTTCCCGGCTTGACGGGCTTGAAT
TTGACCCGGAACGGCTTAACGTGATTGAAGCGCGGCTGAATGAGATTAACCAGTTAAAACGAAAATACGGCAGCACGATC
GAAGAAATTCTGGAATACGGGTCCAAAATTGAAGAAGAAATTGAATCGATCGTAAACCGCGACCATCATGTAGAGCTTTT
GCAAAAAGAACTGCAGACGGTAAAACGCGATCTTTATTTGGAAGCCAAGCAGCTCAGCGATTTGCGCAAAAAATGGGCAG
GAAAGCTGACTGAAAATATCCATTCCGAATTAAAGCAGCTGTATATGGATAAAACAAAGTTTGAAGTCCGTTTTCTTGCC
GCTGCTGATGATTATTATGAGGCGGATGACATTCCGTTCCGGCGCGACGGGCTCGATCAGGTTGAATTTTACATTTCCAC
CAACCCGGGCGAACCGCTAAAACCGCTCGCAAAAACTGCTTCAGGCGGGGAATTGTCGCGGATTATGCTGGCATTAAAAA
CGATTTTTTCCCGGCACCAGGGGATCACTTCCGTCATTTTCGACGAAGTGGACACCGGCGTAAGCGGCCGTGTAGCGCAG
GCGATTGCGGAAAAAATTTACCATATCTCGGTCCATTCGCAAGTCCTTTGCATTACCCATCTGCCGCAGGTTGCCGCCAT
GGCGGACACGCATCTGCTGATCATGAAAGAAACCGAAAAGGGGAGAACGCGGACAAAAGTGAAGCCTTTAGGGCAGGAAG
AAAAAATTAAAGAAATCGGCCGCATGATTTCAGGTGTTGAAATGACAGAGCTGACAAGACAGCATGCGAAAGAGCTCCTC
GAACTGGCCGAAGCGATAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150KCE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.511

100

0.601