Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   L1879_RS10205 Genome accession   NZ_CP091131
Coordinates   2166471..2167265 (+) Length   264 a.a.
NCBI ID   WP_258921168.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain TM3     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2161471..2172265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS10175 trpCF 2162227..2163651 (+) 1425 WP_258921164.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -
  L1879_RS10180 trpB 2163629..2164828 (+) 1200 WP_258921165.1 tryptophan synthase subunit beta -
  L1879_RS10185 - 2164821..2164967 (+) 147 WP_013860290.1 hypothetical protein -
  L1879_RS10190 trpA 2164960..2165751 (+) 792 WP_258921166.1 tryptophan synthase subunit alpha -
  L1879_RS10195 - 2165999..2166181 (-) 183 WP_258921167.1 YfhD family protein -
  L1879_RS10200 - 2166260..2166382 (-) 123 WP_017552869.1 YfhE family protein -
  L1879_RS10205 recX 2166471..2167265 (+) 795 WP_258921168.1 recombination regulator RecX Regulator
  L1879_RS10210 - 2167268..2167585 (+) 318 WP_017552871.1 YfhH family protein -
  L1879_RS10215 mutY 2168894..2170012 (-) 1119 WP_258921169.1 A/G-specific adenine glycosylase -
  L1879_RS10220 - 2170191..2171171 (+) 981 WP_014097361.1 metal-dependent hydrolase -
  L1879_RS10225 - 2171258..2171416 (+) 159 WP_014097362.1 small, acid-soluble spore protein K -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30723.41 Da        Isoelectric Point: 8.9222

>NTDB_id=647944 L1879_RS10205 WP_258921168.1 2166471..2167265(+) (recX) [Heyndrickxia coagulans strain TM3]
MPVITKISLQKNNKERYNIFLDGKYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIRFLSYRMRSEKEV
RDDLIKKEFAPEVVRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVINRELQQKGIPPELIEKALEIFDANQQVEH
ALVLAEKLSRQHARLSEKLLKQKVKQGLTVKGYPPEVISAAMAALHVEKDEEAEWEALLQHAEKAKRKYGKFSGSAYRQK
MKQFLYRKGFPMDLIERYLREEGD

Nucleotide


Download         Length: 795 bp        

>NTDB_id=647944 L1879_RS10205 WP_258921168.1 2166471..2167265(+) (recX) [Heyndrickxia coagulans strain TM3]
GTGCCTGTCATTACAAAAATTTCGCTTCAAAAAAACAATAAAGAACGATACAATATTTTTCTTGACGGAAAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAAGGAAAAGAATTGGATGAGCTTGATATTGAAGCGATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAATACCGCCATCCGTTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCGTCCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
TGATGATGCGGAATTTGCCGCAAGTTTCGTGCGGACACAAATGAATACAACGCATAAAGGGCCTGTTGTCATTAACAGGG
AACTTCAGCAAAAAGGCATTCCACCGGAGCTGATCGAAAAGGCGCTTGAAATTTTTGATGCTAATCAGCAAGTGGAACAC
GCCCTTGTCCTGGCAGAAAAACTTTCCAGGCAGCATGCCCGGTTGTCGGAGAAGCTTTTAAAACAAAAAGTGAAGCAGGG
GCTTACAGTAAAAGGCTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATGTTGAAAAGGATGAAGAAGCAG
AGTGGGAAGCCCTTCTTCAGCATGCGGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATCCGCCTACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGATGGATTTGATAGAGCGCTATTTGCGGGAAGAGGGGGATTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.852

99.621

0.527