Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L1879_RS06355 Genome accession   NZ_CP091131
Coordinates   1329056..1330426 (-) Length   456 a.a.
NCBI ID   WP_017551240.1    Uniprot ID   A0A8B4BWR1
Organism   Heyndrickxia coagulans strain TM3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1324056..1335426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS06335 gltX 1324559..1326019 (-) 1461 WP_013858056.1 glutamate--tRNA ligase -
  L1879_RS06340 ispF 1326415..1326891 (-) 477 WP_258922126.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  L1879_RS06345 ispD 1326894..1327574 (-) 681 WP_017551237.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  L1879_RS06350 - 1327640..1328725 (-) 1086 WP_258922127.1 PIN/TRAM domain-containing protein -
  L1879_RS06355 radA 1329056..1330426 (-) 1371 WP_017551240.1 DNA repair protein RadA Machinery gene
  L1879_RS06360 clpC 1330566..1333016 (-) 2451 WP_013858051.1 ATP-dependent protease ATP-binding subunit ClpC -
  L1879_RS06365 - 1333033..1334100 (-) 1068 WP_118498379.1 protein arginine kinase -
  L1879_RS06370 - 1334100..1334645 (-) 546 WP_017551242.1 UvrB/UvrC motif-containing protein -
  L1879_RS06375 - 1334665..1335126 (-) 462 WP_013858048.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49786.28 Da        Isoelectric Point: 7.7437

>NTDB_id=647933 L1879_RS06355 WP_017551240.1 1329056..1330426(-) (radA) [Heyndrickxia coagulans strain TM3]
MAKKTVKFVCQNCGYESPKWMGKCPQCNQWNQMVEEAEAPKRRGFFLHPEPGNETKAAPITSIESKEEKRTKVDFGELNR
VLGGGIVAGSLVLIGGDPGIGKSTLLLQVSSQLAKHGLNVLYISGEESAKQTKLRADRLNIHTDHLYVLPETDLSVIQQA
IDELNPGFVIIDSIQTIYHPEIQSAPGSVSQVRETTAQLMRTAKTKNVAIFIVGHVTKEGSIAGPRVLEHMVDTVLYFEG
ERHNAYRILRAVKNRFGSTNEIAILEMKESGLEEVQNPSEIFLEERTKGAAGSTVVASIEGTRPVLVEIQALLAPTFFNM
PRRMASGIDYNRVTLIMAVLEKRAGLLIQNQDAYLKVAGGLKVDEPAVDLAVAVSVASSFRDKPTNADDCIIGEVGLTGE
VRRVSRIEQRVQEAAKLGFRRAIIPKNNMGGWTPPKEIQVIGVATIQEALKAALGG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=647933 L1879_RS06355 WP_017551240.1 1329056..1330426(-) (radA) [Heyndrickxia coagulans strain TM3]
ATGGCAAAAAAAACCGTGAAGTTTGTTTGCCAGAACTGCGGCTACGAGTCGCCAAAATGGATGGGAAAGTGCCCGCAATG
CAACCAGTGGAACCAGATGGTGGAGGAAGCGGAGGCGCCAAAAAGGAGGGGCTTTTTTTTACATCCTGAGCCCGGAAATG
AAACCAAAGCGGCGCCTATTACGTCTATAGAGTCTAAAGAAGAAAAAAGGACGAAAGTGGATTTTGGCGAGCTGAATCGT
GTCCTCGGAGGCGGCATTGTTGCCGGGTCACTTGTTTTGATCGGCGGGGATCCTGGGATCGGCAAATCAACCCTGCTTTT
GCAAGTGTCATCACAACTGGCAAAGCACGGGTTAAATGTACTGTATATCTCCGGGGAGGAATCGGCGAAACAGACGAAAT
TAAGGGCAGACCGGTTAAACATCCATACCGACCATCTTTATGTGCTGCCGGAAACGGACCTTTCCGTGATCCAGCAGGCG
ATAGATGAACTGAACCCCGGCTTTGTTATCATTGATTCCATCCAGACGATTTACCATCCGGAAATCCAGTCTGCGCCGGG
CAGTGTGTCGCAAGTGAGGGAAACGACTGCACAGCTGATGCGGACGGCAAAAACAAAAAATGTGGCCATCTTCATTGTCG
GCCACGTGACAAAAGAAGGCTCCATTGCCGGCCCGCGCGTGCTTGAACATATGGTGGATACGGTCCTGTATTTTGAAGGT
GAACGCCATAATGCCTACCGGATATTAAGGGCGGTCAAAAACCGCTTTGGCTCGACCAATGAAATTGCGATTTTGGAAAT
GAAAGAATCCGGTTTGGAAGAAGTCCAGAACCCTTCCGAAATTTTTCTGGAAGAACGGACAAAAGGTGCAGCCGGTTCTA
CCGTGGTTGCTTCCATTGAGGGGACGCGCCCGGTGCTTGTCGAGATCCAGGCGCTTTTGGCTCCGACGTTTTTCAATATG
CCGCGGCGGATGGCATCCGGGATTGATTATAACCGTGTCACGCTGATTATGGCGGTGCTTGAAAAACGGGCCGGCCTTTT
GATTCAGAACCAGGATGCATATTTAAAAGTTGCCGGCGGCCTGAAAGTGGATGAACCGGCAGTGGATTTGGCAGTTGCCG
TCAGCGTGGCATCCAGTTTCCGCGACAAGCCGACAAATGCGGATGACTGCATTATCGGAGAAGTCGGGCTGACGGGGGAA
GTCAGGCGGGTGTCCCGCATTGAGCAGCGCGTCCAGGAAGCGGCAAAGCTCGGTTTCCGGCGGGCGATCATTCCGAAAAA
TAATATGGGTGGGTGGACGCCGCCAAAGGAGATTCAAGTGATCGGCGTCGCTACCATCCAGGAAGCTTTAAAAGCGGCAC
TCGGAGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BWR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.242

100

0.717
  radA Streptococcus mitis NCTC 12261

63.415

98.904

0.627
  radA Streptococcus mitis SK321

63.193

98.904

0.625
  radA Streptococcus pneumoniae Rx1

63.193

98.904

0.625
  radA Streptococcus pneumoniae D39

63.193

98.904

0.625
  radA Streptococcus pneumoniae R6

63.193

98.904

0.625
  radA Streptococcus pneumoniae TIGR4

63.193

98.904

0.625