Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA73_RS27760 Genome accession   NZ_CP107880
Coordinates   6162187..6162798 (+) Length   203 a.a.
NCBI ID   WP_266713746.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6157187..6167798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS27740 (OHA73_27740) - 6157187..6159292 (+) 2106 WP_327656408.1 hypothetical protein -
  OHA73_RS27745 (OHA73_27745) - 6159391..6160299 (+) 909 WP_327656409.1 ABC transporter ATP-binding protein -
  OHA73_RS27750 (OHA73_27750) - 6160296..6161036 (+) 741 WP_266713744.1 ABC transporter permease -
  OHA73_RS27755 (OHA73_27755) - 6161117..6162190 (+) 1074 WP_267072798.1 sensor histidine kinase -
  OHA73_RS27760 (OHA73_27760) vraR 6162187..6162798 (+) 612 WP_266713746.1 response regulator transcription factor Regulator
  OHA73_RS27765 (OHA73_27765) - 6162839..6163681 (-) 843 WP_266713748.1 transglutaminase-like domain-containing protein -
  OHA73_RS27770 (OHA73_27770) - 6163734..6164738 (-) 1005 WP_267069335.1 GNAT family N-acetyltransferase -
  OHA73_RS27775 (OHA73_27775) fdxA 6164879..6165199 (+) 321 WP_266713752.1 ferredoxin -
  OHA73_RS27780 (OHA73_27780) - 6165371..6166474 (+) 1104 WP_327656410.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OHA73_RS27785 (OHA73_27785) - 6167358..6167786 (-) 429 WP_266713754.1 ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21149.41 Da        Isoelectric Point: 4.8022

>NTDB_id=647932 OHA73_RS27760 WP_266713746.1 6162187..6162798(+) (vraR) [Streptomyces sp. NBC_00483]
MSTIKVLLAEDQSMVREALAALLGLEADIEVVAQVARGDEVVAAARAHAVDVALLDIEMPGCTGIEAAAQLREVLPELKV
VVLTTFGRPGYLRSAMEAGAAAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAEGANPLTDREREVLRAAADGATN
AELAAALHLSQGTVRNYLSVAIQKLAVRNRAEAVAAAREKGWL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=647932 OHA73_RS27760 WP_266713746.1 6162187..6162798(+) (vraR) [Streptomyces sp. NBC_00483]
ATGAGCACGATCAAGGTGTTGTTGGCCGAGGACCAGTCGATGGTGCGCGAGGCGCTGGCCGCGCTGCTCGGCCTGGAGGC
GGACATCGAGGTCGTCGCGCAGGTGGCGCGCGGTGACGAGGTGGTGGCGGCCGCCCGCGCGCACGCGGTGGACGTGGCGC
TCCTCGACATCGAGATGCCGGGCTGTACGGGCATCGAGGCGGCGGCCCAACTCCGCGAGGTCCTGCCGGAGTTGAAGGTC
GTCGTGCTCACCACGTTCGGCCGGCCCGGCTATCTGCGCAGCGCCATGGAGGCGGGCGCGGCCGCGTTCCTGGTCAAGGA
CGCCCCGGCCGCGCAGCTCGCCGAGGCCGTACGGAAGGTGCTCGCGGGCGAACGCGTCATCGACCCCACGCTCGCGGCGG
CGGCCCTCGCGGAGGGCGCGAATCCGCTCACCGACCGCGAACGCGAGGTGCTGCGCGCGGCGGCTGACGGCGCCACCAAC
GCGGAACTGGCGGCCGCCCTCCACCTGTCCCAGGGCACGGTCCGCAACTACCTGTCGGTGGCGATCCAGAAGCTGGCGGT
GCGCAATCGGGCGGAGGCGGTGGCCGCCGCGCGGGAGAAGGGCTGGTTGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(142-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

35.749

100

0.365