Detailed information NTG0647929

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: L1879_RS03465
• Genome accession: NZ_CP091131
• Coordinates: 696503..697888 (-)
• Length: 461 a.a.
• NCBI ID: WP_258921847.1
• Uniprot ID: -
• Organism: Heyndrickxia coagulans strain TM3
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 691503..702888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1879_RS03435	flgL	691974..692867 (-)	894	WP_017553665.1	flagellar hook-associated protein FlgL	-
L1879_RS03440	flgK	692882..694498 (-)	1617	WP_258921843.1	flagellar hook-associated protein FlgK	-
L1879_RS03445	-	694521..694991 (-)	471	WP_258921844.1	flagellar protein FlgN	-
L1879_RS03450	flgM	695004..695270 (-)	267	WP_258921845.1	flagellar biosynthesis anti-sigma factor FlgM	-
L1879_RS03455	-	695341..695736 (-)	396	WP_013858610.1	TIGR03826 family flagellar region protein	-
L1879_RS03460	-	695803..696510 (-)	708	WP_258921846.1	ComF family protein	-
L1879_RS03465	comFA	696503..697888 (-)	1386	WP_258921847.1	DEAD/DEAH box helicase	Machinery gene
L1879_RS03470	-	698190..699032 (-)	843	WP_258921848.1	DegV family protein	-
L1879_RS03475	-	699598..701022 (+)	1425	WP_258921849.1	amino acid permease	-
L1879_RS03480	-	701303..701986 (-)	684	WP_013858603.1	response regulator transcription factor	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 51686.94 Da
• Isoelectric Point: 8.7832

>NTDB_id=647929 L1879_RS03465 WP_258921847.1 696503..697888(-) (comFA) [Heyndrickxia coagulans strain TM3]
MPSVFSEQLQRHLAGRILFEPEIPFSPELLDQHFKQGWIRAEPAIQGEFPHCVCLRCGNRAPHLFAEFPCAHCGKTSIYC
RNCLMMGRVTACKPLITWAGPAPAFHPPRHPLHWEGTLSEGQHAASEAVKIAILQKNELLVWAVCGAGKTEVLFNGIEAA
LANGERVCIATPRTDVVLELAPRFRRVFPDIPIAALYGGSPDRHKWAQLVISTTHQLYRFASAFDAVIVDEVDAFPYTFD
ETLQRAVQKAAKDRCARIYLTATPGETWQLECKAGKRPFVTIPARYHRKPLPVPIFKWAGNWRRKFEKGQLPVPVEAWVK
KRLETGKQALLFLPNIRLMKKAEPVFKQLHPSIESVHAEDPERKEKVEKMRARETPLLLTTTILERGVTFPDIDVCVVGA
EDAIFTEAALVQIAGRAGRSADFPNGDVTFFHYGKSNAMVKAQRHILSMNEEAGKRGLLDA

Nucleotide

• Length: 1386 bp

>NTDB_id=647929 L1879_RS03465 WP_258921847.1 696503..697888(-) (comFA) [Heyndrickxia coagulans strain TM3]
TTGCCTTCTGTTTTCTCCGAACAGCTTCAACGCCACCTCGCCGGACGGATCCTGTTCGAACCGGAAATCCCTTTTTCACC
GGAACTGCTTGATCAGCACTTTAAACAAGGCTGGATCCGCGCTGAGCCGGCGATACAGGGCGAATTCCCGCACTGTGTCT
GCTTGCGCTGCGGCAACCGCGCGCCGCATCTTTTTGCCGAATTCCCTTGCGCCCACTGCGGGAAAACGAGCATTTATTGC
CGGAACTGCCTGATGATGGGGCGGGTCACCGCATGCAAGCCGCTTATCACATGGGCAGGCCCTGCGCCCGCATTCCACCC
GCCCCGGCACCCGCTCCATTGGGAAGGGACCCTCTCTGAAGGGCAGCATGCCGCATCCGAAGCGGTCAAAATAGCCATTC
TCCAAAAAAATGAGCTCTTGGTTTGGGCGGTTTGCGGAGCAGGTAAAACAGAGGTCCTTTTTAACGGGATTGAAGCGGCG
CTTGCAAACGGCGAACGCGTCTGCATCGCGACACCAAGGACAGATGTCGTCCTTGAACTTGCCCCCCGCTTCCGCCGCGT
TTTCCCGGATATTCCGATTGCCGCGCTCTACGGTGGCAGCCCTGACCGCCATAAATGGGCGCAGCTCGTGATCTCCACTA
CCCACCAGCTGTACCGCTTCGCATCTGCTTTCGATGCCGTAATTGTGGATGAGGTGGACGCTTTTCCGTATACTTTCGAT
GAAACGCTGCAGCGCGCCGTCCAAAAAGCGGCAAAAGATAGGTGCGCCCGCATTTATCTTACCGCAACGCCGGGTGAAAC
ATGGCAGCTTGAATGCAAGGCAGGCAAGCGCCCGTTTGTCACGATCCCGGCCCGTTACCACCGCAAGCCCCTCCCCGTTC
CTATATTCAAATGGGCAGGCAACTGGCGGAGAAAGTTTGAAAAAGGACAGCTCCCGGTTCCAGTTGAAGCATGGGTAAAA
AAGAGACTTGAAACCGGAAAACAGGCGCTTCTTTTTCTCCCGAACATCCGCCTCATGAAAAAAGCAGAACCGGTTTTTAA
ACAACTGCATCCGTCGATTGAATCGGTGCACGCAGAAGACCCGGAACGGAAAGAAAAAGTGGAAAAGATGCGCGCCCGTG
AAACGCCGCTTTTGCTGACGACGACCATTCTTGAACGCGGCGTCACGTTCCCGGACATTGATGTCTGTGTCGTCGGGGCG
GAAGATGCCATTTTTACGGAAGCCGCCCTCGTCCAGATCGCGGGCCGGGCTGGGAGAAGCGCCGATTTCCCAAATGGGGA
TGTTACGTTCTTCCATTATGGAAAATCAAATGCGATGGTGAAAGCACAGCGCCATATTCTCTCCATGAATGAAGAAGCGG
GAAAGCGGGGGTTGCTCGATGCATGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (118-265)

• Helicase conserved C-terminal domain (Helicase_C) (322-420)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	49.007	98.265	0.482
comFA	Latilactobacillus sakei subsp. sakei 23K	39.211	93.492	0.367