Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L1879_RS03270 Genome accession   NZ_CP091131
Coordinates   652351..653301 (-) Length   316 a.a.
NCBI ID   WP_258921829.1    Uniprot ID   A0AAW7CGV7
Organism   Heyndrickxia coagulans strain TM3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 647351..658301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS03235 - 647999..648691 (-) 693 WP_017552707.1 response regulator transcription factor -
  L1879_RS03245 - 648802..649076 (-) 275 Protein_645 DUF5316 domain-containing protein -
  L1879_RS03250 - 649410..649646 (+) 237 WP_026104642.1 4Fe-4S binding protein -
  L1879_RS03255 - 649703..650641 (-) 939 WP_258921828.1 siderophore ABC transporter substrate-binding protein -
  L1879_RS03260 - 650656..651414 (-) 759 WP_017553920.1 ABC transporter ATP-binding protein -
  L1879_RS03265 - 651408..652358 (-) 951 WP_019721714.1 iron chelate uptake ABC transporter family permease subunit -
  L1879_RS03270 ceuB 652351..653301 (-) 951 WP_258921829.1 ABC transporter permease Machinery gene
  L1879_RS03275 - 653563..654750 (-) 1188 WP_367616902.1 PDZ domain-containing protein -
  L1879_RS03280 - 655018..656454 (-) 1437 WP_061086702.1 S41 family peptidase -
  L1879_RS03285 - 656905..657552 (-) 648 WP_258921830.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34406.49 Da        Isoelectric Point: 9.9995

>NTDB_id=647928 L1879_RS03270 WP_258921829.1 652351..653301(-) (ceuB) [Heyndrickxia coagulans strain TM3]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGVGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKYDLV
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVVNLGLVLVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRIVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=647928 L1879_RS03270 WP_258921829.1 652351..653301(-) (ceuB) [Heyndrickxia coagulans strain TM3]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTGCTGTCCATCATTTCGATTTTTATCGGCGCGGAAAATATCAGGCC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACAGAAATTTTGCTGGCAAGCCGCCTGCCGCGCCTGATCAGCATCATCA
TTGCGGGCGTGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGCTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTGGTTGCGATCATCCTGTTTTCTGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCCTTTTGCTTTGCCCTGGCCGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGTTCTGTATCTACTTTTTTTGCGTATAAATACGACTTAGTC
CAGAGCCTTTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
GGCCGTTTTGGTCGCGTATGTGTTTGCCAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAATCTTGGCC
TGAATTACAAGCAGGTGGTAAACCTCGGCCTTGTCCTTGTCGCGCTGATTACTTCGGCAACGGTACTGACAGTCGGCACT
ATCCCGTTTCTGGGCTTAATTATTCCAAACATTGTGTCCATTTACCGCGGCGACCATATGAAAAAAAGCATTACGGTTAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTGTTTTGCGATATTTTGGGGCGCATTGTCATTTATCCGTATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGCGGCATTTTTGTATATTTGCTGCTGAGGAGGCACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.438

99.051

0.509