Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L1879_RS02545 Genome accession   NZ_CP091131
Coordinates   506378..508192 (-) Length   604 a.a.
NCBI ID   WP_258921771.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain TM3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 501378..513192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS02515 - 501931..502314 (-) 384 WP_258921769.1 hypothetical protein -
  L1879_RS02520 - 502451..503035 (+) 585 WP_014095718.1 CYTH domain-containing protein -
  L1879_RS02525 - 503032..503811 (+) 780 WP_258921770.1 lytic transglycosylase domain-containing protein -
  L1879_RS02530 - 504250..504651 (+) 402 WP_019721833.1 globin -
  L1879_RS02535 - 504648..505505 (+) 858 WP_285957934.1 ClpXP adapter SpxH family protein -
  L1879_RS02540 - 505796..505987 (+) 192 WP_017553961.1 hypothetical protein -
  L1879_RS02545 pepF 506378..508192 (-) 1815 WP_258921771.1 oligoendopeptidase F Regulator
  L1879_RS02550 - 508260..509486 (-) 1227 WP_258921772.1 competence protein CoiA -
  L1879_RS02555 mecA 509762..510421 (-) 660 WP_258921773.1 adaptor protein MecA -
  L1879_RS02560 spxA 510785..511180 (-) 396 WP_013858789.1 transcriptional regulator SpxA -
  L1879_RS02565 - 511459..512400 (-) 942 WP_258921774.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69297.91 Da        Isoelectric Point: 5.0656

>NTDB_id=647919 L1879_RS02545 WP_258921771.1 506378..508192(-) (pepF) [Heyndrickxia coagulans strain TM3]
MENGKKVHALPSRNEVHDELTWRLEDIFPSDDDWNKEYEAVKEKLAGAASYQGKLGESAEQLYHALQFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGMDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYVPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALAANHIPEKVYDQLVETVNRNLGLLQRYVALRKKVLQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGGEYQGILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYFGTDIAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMASPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=647919 L1879_RS02545 WP_258921771.1 506378..508192(-) (pepF) [Heyndrickxia coagulans strain TM3]
ATGGAAAACGGGAAAAAAGTACACGCGTTGCCAAGCCGGAACGAGGTCCATGACGAATTAACCTGGAGGCTTGAGGATAT
TTTTCCGAGTGACGATGACTGGAATAAAGAATATGAAGCAGTAAAAGAAAAGCTGGCCGGTGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTCCAGTTCCAGGATGAAGTGACGGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATGGACAGCAAAGCGAAAAGCCTTGC
CGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTGTCGATTGAGGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGTGCCGCTTCAGCTGTACCGGCATGCATTGGAAGAAATTAATGAAATGCGCCCGCATATTTTATCTAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCGGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTCAACAATGCAGACCT
TGAGTTCCCGACAGTAATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGCTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAAAAATTGTACGCGACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTAGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTGCGGC
AAACCACATTCCGGAAAAAGTGTACGACCAGCTCGTGGAGACGGTGAACCGAAATCTCGGTTTGCTGCAGCGGTATGTTG
CTTTGCGCAAAAAAGTGCTGCAGCTTGATGAAGTGCATATGTACGATCTGTATACGCCGCTTGTCCAGGACGCCGATATG
GAAGTGACATATGAAAAAGCGAAAGAGATCGTGCTTGACGGACTCCATCCGCTCGGCGGGGAATACCAGGGCATTTTACA
GCAGGCGTTTGAAAACCGCTGGATTGACGTGGTGGAAAACAAAGGCAAGCGGAGTGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCCATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCGCTGTTGAACGATTATTTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTACTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTCTTCCGCCAGACGATGTTTGCCGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGCTGACAGCGGAACTTTTGACAGATGAGTATTATAAGCTGAACCAAAAATACTTTGGCACGGATATCGC
CATCGATCAGGAAATCGGGCTTGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCATTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTACATCGGCTATTTA
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGGCGTCGCCCCAGCCGGTCGAAGA
TGCGTTAAAAGTATTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.338

98.013

0.493