Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA73_RS18855 Genome accession   NZ_CP107880
Coordinates   4276741..4277715 (-) Length   324 a.a.
NCBI ID   WP_327658486.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4271741..4282715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS18830 (OHA73_18830) - 4271938..4272792 (+) 855 WP_267070180.1 DUF4190 domain-containing protein -
  OHA73_RS18835 (OHA73_18835) - 4272835..4273605 (-) 771 WP_267070179.1 N-acetyltransferase -
  OHA73_RS18840 (OHA73_18840) - 4273610..4274332 (-) 723 WP_267070178.1 HNH endonuclease family protein -
  OHA73_RS18845 (OHA73_18845) - 4274527..4275558 (-) 1032 WP_327655603.1 endo-1,4-beta-xylanase -
  OHA73_RS18850 (OHA73_18850) - 4275594..4276496 (-) 903 WP_327655604.1 alpha/beta hydrolase -
  OHA73_RS18855 (OHA73_18855) cytR 4276741..4277715 (-) 975 WP_327658486.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA73_RS18860 (OHA73_18860) - 4277987..4278805 (-) 819 WP_327655605.1 hypothetical protein -
  OHA73_RS18865 (OHA73_18865) mfd 4278957..4282490 (-) 3534 WP_327655606.1 transcription-repair coupling factor -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 34821.80 Da        Isoelectric Point: 7.9617

>NTDB_id=647908 OHA73_RS18855 WP_327658486.1 4276741..4277715(-) (cytR) [Streptomyces sp. NBC_00483]
MRIAHIAALAGVSVPTVSRVLNGRPGVSDGTRARIEELISEHGYRKTSDNRQKFVELIFRELKSMWVGEIIRGVEEVARR
NRAGVIVSKFGLHDADASVDDTVGRRPLCVLSVFQLPEAERERLRAKGIPYVVFDPMDDVPDGVPYVGATNFKGGRSATR
HLIALGHRHIALIGGPDHAFCLARAAGYRSALEAAGLPVDPDATVRGPLTREGGQAAARALLGRPDRPTAIVTANDMQAL
GVYQAAREAGLRVPQDLSVVGFDDMPVAVWADPPLTTVRQPLDEMAASATELALALGRGERVRQLGVEIATELVVRESTA
APRS

Nucleotide


Download         Length: 975 bp        

>NTDB_id=647908 OHA73_RS18855 WP_327658486.1 4276741..4277715(-) (cytR) [Streptomyces sp. NBC_00483]
GTGCGGATCGCGCACATCGCCGCGTTGGCGGGAGTGTCGGTGCCGACGGTGTCGCGGGTGCTCAACGGCAGGCCGGGGGT
GTCCGACGGGACCCGGGCCCGGATCGAGGAACTGATCAGCGAGCACGGATACCGCAAGACCTCCGACAACAGGCAGAAGT
TCGTGGAGCTGATCTTCCGCGAGCTGAAGAGCATGTGGGTGGGGGAGATCATCCGCGGCGTCGAGGAGGTGGCCCGCAGG
AACCGGGCCGGTGTCATCGTCTCCAAGTTCGGCCTGCACGACGCGGACGCCTCGGTCGACGACACCGTGGGGCGGCGCCC
GCTGTGCGTACTGTCGGTGTTCCAGCTCCCCGAGGCGGAGCGCGAGCGGCTCAGGGCGAAGGGCATCCCGTACGTCGTCT
TCGACCCGATGGACGACGTGCCCGACGGCGTCCCCTACGTCGGCGCCACCAACTTCAAGGGCGGCCGGTCGGCGACGCGC
CACCTGATCGCCCTCGGCCACCGGCACATCGCCCTGATCGGCGGCCCCGACCACGCGTTCTGCCTTGCCAGGGCGGCCGG
TTACCGATCCGCGCTGGAGGCGGCCGGGCTGCCCGTGGACCCGGACGCGACGGTCCGTGGGCCGCTCACGCGCGAGGGCG
GCCAGGCCGCGGCCCGGGCGCTGCTGGGCCGCCCCGACCGGCCCACCGCGATCGTCACCGCCAACGACATGCAGGCACTC
GGCGTCTACCAGGCGGCGCGCGAGGCCGGGCTGCGCGTCCCGCAGGACCTGAGCGTGGTCGGCTTCGACGACATGCCGGT
CGCCGTCTGGGCCGATCCGCCGCTGACGACGGTGCGCCAGCCGCTCGACGAAATGGCCGCCTCCGCAACGGAGTTGGCCC
TCGCGCTGGGCCGTGGGGAGCGGGTGCGGCAGCTCGGTGTGGAGATCGCCACGGAACTCGTGGTCCGCGAGAGCACGGCG
GCGCCGCGGAGTTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(159-319)

Bacterial regulatory proteins, lacI family (LacI)

(3-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.798

100

0.392
  cytR Vibrio parahaemolyticus RIMD 2210633

35.905

100

0.373