Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA73_RS15585 Genome accession   NZ_CP107880
Coordinates   3513550..3515475 (+) Length   641 a.a.
NCBI ID   WP_267070550.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3508550..3520475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS15570 (OHA73_15580) - 3509828..3510139 (+) 312 WP_266719927.1 YtxH domain-containing protein -
  OHA73_RS15575 (OHA73_15585) - 3510207..3511637 (+) 1431 WP_266719925.1 FGGY family carbohydrate kinase -
  OHA73_RS15580 (OHA73_15590) rcrP 3511811..3513550 (+) 1740 WP_266719923.1 ABC transporter ATP-binding protein Regulator
  OHA73_RS15585 (OHA73_15595) rcrQ 3513550..3515475 (+) 1926 WP_267070550.1 ABC transporter ATP-binding protein Regulator
  OHA73_RS15590 (OHA73_15600) - 3515600..3516886 (-) 1287 WP_266719919.1 RNA polymerase sigma factor -
  OHA73_RS15595 (OHA73_15605) dnaG 3517040..3518947 (-) 1908 WP_267070549.1 DNA primase -
  OHA73_RS15600 (OHA73_15610) - 3519003..3520268 (-) 1266 WP_266719915.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68614.75 Da        Isoelectric Point: 4.9581

>NTDB_id=647900 OHA73_RS15585 WP_267070550.1 3513550..3515475(+) (rcrQ) [Streptomyces sp. NBC_00483]
MSGPMGRMAAGAPGSRSMDFKGSGKRLLKRLAAHRTAVIGVLVSVVISVGLSVVGPKILGHATDLLFGGIIGGQMPAGQT
KEQVLDGLRAKGDGGMADMLGGVDFTPGQGVDFGAIGEVLLLGLAVFAVAGLTMMIGTRLANRTINLAVGQLRAELQGKL
SRLPLSYYDQQKRGEVLSRATNDMDNLGQTLQQTMGQMLNSLLTVIGVLAMMFWISWLLALVALVTVPLSVFVAAKVGKR
SQPQFVQQWRATGALNAHIEEMYTGHNLVKVFGRQDESAELFAEQNDALYEASFKAQFNSGIMQPLMFFISNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVATAERVFELLDAEEQSAEPVPGEKPDNLRGHVEFEH
VAFRYEKDTPLIEDLSLTADPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDIAKMSREELRAGIGMVLQDTW
LFGGTIAENIAYGAPKDVTREEVEEAAKAAHADRFIRTLPDGYDTVLDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLASGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHEALVAADGAYQRLYEAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=647900 OHA73_RS15585 WP_267070550.1 3513550..3515475(+) (rcrQ) [Streptomyces sp. NBC_00483]
ATGAGTGGGCCCATGGGGCGGATGGCGGCCGGTGCGCCCGGTTCGCGTTCGATGGACTTCAAGGGGTCCGGCAAGCGGCT
CCTGAAGCGGCTCGCCGCACACCGCACGGCGGTGATCGGGGTGCTCGTCTCCGTCGTGATCAGCGTCGGCCTGTCGGTGG
TCGGGCCGAAGATCCTCGGCCACGCCACCGATCTGCTGTTCGGCGGGATCATCGGCGGGCAGATGCCGGCCGGGCAGACC
AAGGAACAGGTCCTCGATGGCCTGCGCGCCAAGGGTGACGGCGGCATGGCCGACATGCTCGGCGGCGTCGACTTCACGCC
GGGACAGGGCGTCGACTTCGGCGCGATCGGTGAGGTGCTGCTGCTCGGCCTCGCCGTGTTCGCCGTCGCGGGGCTGACGA
TGATGATCGGCACCCGGCTCGCCAACCGGACGATCAACCTGGCCGTGGGGCAGCTCCGTGCCGAGCTTCAGGGCAAGCTG
TCGCGGCTGCCGCTGTCGTACTACGACCAGCAGAAGCGCGGCGAGGTACTGAGCCGGGCGACCAACGACATGGACAACCT
CGGGCAGACGCTCCAGCAGACGATGGGGCAGATGCTCAACTCGCTGCTGACCGTCATCGGTGTGCTCGCGATGATGTTCT
GGATCTCCTGGCTGCTCGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGTTCGTCGCGGCGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGCGGGCGACCGGCGCGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAA
CCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGGAGCTGTTCGCCGAACAGAACGACGCGCTGTACGAGGCGTCGT
TCAAGGCGCAGTTCAACAGCGGCATCATGCAGCCGCTGATGTTCTTCATCTCGAACCTGAACTATGTGCTGGTCGCTGTC
GTGGGCGGATTGAGGGTGGCCAGTGGGTCGCTGTCCATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCTACGGCCGAGCGGGTCTTCGAACTGC
TCGACGCGGAGGAGCAGTCGGCGGAGCCGGTGCCCGGCGAGAAGCCGGACAACCTGCGCGGGCACGTCGAGTTCGAGCAC
GTGGCCTTCCGCTACGAGAAGGACACGCCGCTCATCGAGGACCTGTCGCTGACGGCCGACCCCGGTCACACGGTGGCGAT
CGTCGGGCCGACGGGCGCGGGCAAGACGACCCTCGTCAATCTGCTGCTGCGGTTCTACGAGGTCACGGGCGGGCGCATCA
CGCTCGACGGCGTCGACATCGCGAAGATGTCGCGGGAGGAGCTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCCCCGAAGGACGTCACCCGCGAGGAGGTCGAGGAGGCGGC
GAAGGCCGCGCACGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACACCGTGCTCGACGACGAGGGCACCGGCG
TCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTCGTGCTCGACGAGGCG
ACCTCCTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGTTGGCCTCCGGCCGGACGTCGTTCGT
GATCGCGCACCGGTTGTCGACGATTCGGGATGCGGACACGATTCTCGTGATGGAGAACGGGGCGATCGTGGAGCAGGGCT
CGCACGAGGCGCTGGTCGCTGCGGATGGGGCGTATCAGCGTTTGTACGAGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(39-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.252

97.192

0.401