Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA73_RS15580 Genome accession   NZ_CP107880
Coordinates   3511811..3513550 (+) Length   579 a.a.
NCBI ID   WP_266719923.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00483     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3506811..3518550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA73_RS15545 (OHA73_15555) - 3507023..3507601 (+) 579 WP_266719931.1 hypothetical protein -
  OHA73_RS15550 (OHA73_15560) - 3508085..3509122 (+) 1038 WP_266719929.1 rod shape-determining protein -
  OHA73_RS15570 (OHA73_15580) - 3509828..3510139 (+) 312 WP_266719927.1 YtxH domain-containing protein -
  OHA73_RS15575 (OHA73_15585) - 3510207..3511637 (+) 1431 WP_266719925.1 FGGY family carbohydrate kinase -
  OHA73_RS15580 (OHA73_15590) rcrP 3511811..3513550 (+) 1740 WP_266719923.1 ABC transporter ATP-binding protein Regulator
  OHA73_RS15585 (OHA73_15595) rcrQ 3513550..3515475 (+) 1926 WP_267070550.1 ABC transporter ATP-binding protein Regulator
  OHA73_RS15590 (OHA73_15600) - 3515600..3516886 (-) 1287 WP_266719919.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 62735.80 Da        Isoelectric Point: 5.5594

>NTDB_id=647899 OHA73_RS15580 WP_266719923.1 3511811..3513550(+) (rcrP) [Streptomyces sp. NBC_00483]
MLIKLLRTYLRPYKKPIGLLVLLQFLQTCASLYLPTLNADIIDNGVVNGDTGYILEFGALMLGVTVVQVVCNTGAVYFGA
RTAAAVGRDLRAGIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLVASAPIMCVGGVVMALGLDVPLSGV
LLAVLPVMAIVLSLIIRKMRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDDFEKDRFGAANRDLTDVSVATGRIMAL
MFPFVMTIVNVASIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMMPRAEVCAERIQEVLGTDSSVVP
PRPDASVRELRRHGHLELRGADFGYPGAEEPILRGIDITARPGETTAIIGSTGSGKSTLLGLVPRLYDTTAGTVYVDGED
VRGIDPALMAKTVGLVPQKPYLFSGTVATNLRYGNPDATDDELWHALEVAQAKGFVGKLESGLDAPITQGGTNVSGGQRQ
RLAIARTLVQRPEIYLFDDSFSALDYATDAALRRALGEETAEATVVIVAQRVSTIRDADTIIVLDEGRVVGTGRHHELMA
DNETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=647899 OHA73_RS15580 WP_266719923.1 3511811..3513550(+) (rcrP) [Streptomyces sp. NBC_00483]
GTGCTCATAAAACTTCTGCGGACCTATCTCCGTCCGTACAAGAAACCCATCGGGCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCTCGCTGTATCTGCCCACCCTGAACGCCGACATCATTGACAACGGTGTCGTGAACGGCGACACCGGCTACA
TCCTGGAGTTCGGCGCCCTGATGCTGGGCGTCACCGTCGTCCAGGTCGTCTGCAACACCGGCGCCGTCTACTTCGGCGCC
CGGACCGCCGCGGCGGTCGGCCGGGACCTGCGGGCGGGGATCTTCGACCGCGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCCCCTTCGCTGATCACCCGCACCACGAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGGTGGCCTCGGCGCCGATCATGTGTGTCGGCGGCGTCGTCATGGCGCTCGGCCTGGACGTGCCGCTGTCGGGCGTG
CTGCTCGCCGTGCTGCCCGTCATGGCGATCGTCCTGTCGCTGATCATCCGCAAGATGCGGCCGTTGTTCCGGTCCATGCA
GGTCAAGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
ACTTCGAGAAGGACCGGTTCGGAGCCGCGAACCGGGACCTGACCGATGTGTCGGTCGCCACCGGCCGGATCATGGCACTG
ATGTTCCCGTTCGTGATGACGATCGTGAACGTCGCGTCCATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGTGACCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGAGCGTGATGATGGCCACGTTCA
TGTTCATGATGATGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAAGTGCTCGGCACCGATTCGAGTGTGGTGCCG
CCACGGCCCGACGCGTCGGTGCGTGAACTGCGCCGCCACGGCCATCTGGAGCTGCGGGGCGCCGACTTCGGCTACCCGGG
CGCCGAGGAACCCATCCTGCGCGGCATCGACATCACGGCCCGCCCCGGCGAGACCACGGCCATCATCGGGTCGACCGGCA
GCGGCAAGTCGACGCTGCTCGGCCTCGTGCCGCGGCTGTACGACACCACGGCCGGCACGGTCTACGTGGACGGCGAGGAC
GTCCGCGGGATCGACCCGGCACTGATGGCGAAGACGGTCGGGCTCGTGCCGCAGAAGCCGTACCTGTTCTCCGGCACCGT
CGCCACGAACCTGCGCTACGGCAATCCGGACGCCACCGACGACGAGCTGTGGCACGCGCTGGAAGTGGCGCAGGCCAAGG
GGTTCGTCGGCAAGCTGGAGAGCGGGCTCGACGCACCCATCACGCAGGGCGGTACCAACGTCTCCGGCGGTCAGCGCCAG
CGCCTCGCCATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGC
GACCGACGCGGCGCTGCGCCGGGCGCTCGGCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCGA
CGATCCGCGACGCCGACACGATCATCGTGCTCGACGAGGGCCGCGTCGTCGGCACCGGACGCCATCACGAGCTGATGGCC
GACAACGAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-500)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.32

97.237

0.392