Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L1999_RS21200 Genome accession   NZ_CP091110
Coordinates   4465973..4467661 (-) Length   562 a.a.
NCBI ID   WP_235740382.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4460973..4472661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS21175 (L1999_21175) - 4462191..4462424 (+) 234 WP_215043367.1 DUF2627 domain-containing protein -
  L1999_RS21180 (L1999_21180) - 4462499..4463227 (-) 729 WP_235740379.1 glycerophosphodiester phosphodiesterase -
  L1999_RS21185 (L1999_21185) - 4463264..4463404 (+) 141 WP_235740380.1 YycC family protein -
  L1999_RS21190 (L1999_21190) spo0A 4463476..4464267 (-) 792 WP_215043373.1 sporulation transcription factor Spo0A -
  L1999_RS21195 (L1999_21195) spoIVB 4464557..4465846 (-) 1290 WP_235740381.1 SpoIVB peptidase -
  L1999_RS21200 (L1999_21200) recN 4465973..4467661 (-) 1689 WP_235740382.1 DNA repair protein RecN Machinery gene
  L1999_RS21205 (L1999_21205) argR 4467678..4468127 (-) 450 WP_235740383.1 transcriptional regulator ArgR -
  L1999_RS21210 (L1999_21210) - 4468379..4469215 (-) 837 WP_235740384.1 TlyA family RNA methyltransferase -
  L1999_RS21215 (L1999_21215) dxs 4469219..4471120 (-) 1902 WP_235740385.1 1-deoxy-D-xylulose-5-phosphate synthase -
  L1999_RS21220 (L1999_21220) - 4471288..4472181 (-) 894 WP_235740386.1 polyprenyl synthetase family protein -
  L1999_RS21225 (L1999_21225) - 4472185..4472418 (-) 234 WP_215043384.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63482.56 Da        Isoelectric Point: 5.3741

>NTDB_id=647792 L1999_RS21200 WP_235740382.1 4465973..4467661(-) (recN) [Neobacillus drentensis strain JC05]
MLAELSIKNFAIIENLSISFEKGLTVLTGETGAGKSIIIDAIHLIVGGRGSAEFVRHGEERAVLEGLFQIDDPNHPVMSK
ACEFGIEIEEGMVILRRDIARTGKSVCRINGKLVTISILREIGATLVDIHGQHEHQELMDEARHLPLLDQFGAEEIDPAQ
NEYAQVFRRYEQTLYKLKSLSENDQQTAHRLDLIQFQLDEIHKSNLKPNEDEELSEEKRRLGNFERVFEAIQTGYNALQG
EQKGLDWIGMVMGSLEEAAALDTSYRELSDLVSNSFYQLEDAAQTLRNELDVLEYDPQRLNEIEARLNEINQLKRKYGKT
IPEILEYAAKIEEEIETLQNKETHIGELEKELVSIKKDLVLEAKQLTDIRRKWAIKLTKLIHQELKELYMEKTIFEIRFE
SEQLHFAKTGVDHIEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
KVAVGSQVLCISHLPQVAAMADTHLYIAKDIKGGRTKTSVTSLKTKEKIKEIGRMISGTEITDLTKQHAEELLQLAGKNK
KK

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=647792 L1999_RS21200 WP_235740382.1 4465973..4467661(-) (recN) [Neobacillus drentensis strain JC05]
TTGTTAGCAGAATTATCAATAAAAAATTTCGCTATTATTGAAAATTTATCAATCTCATTTGAAAAAGGGTTAACGGTTTT
GACAGGGGAAACCGGTGCAGGTAAATCCATTATTATTGATGCGATTCACCTCATCGTTGGAGGCAGAGGATCGGCTGAAT
TTGTCCGCCATGGGGAAGAAAGAGCCGTACTTGAAGGTTTATTCCAAATAGATGACCCTAACCATCCTGTTATGTCAAAA
GCATGTGAATTTGGCATTGAAATTGAAGAGGGCATGGTTATATTACGTCGGGATATCGCTCGAACAGGGAAAAGTGTTTG
TCGAATTAATGGGAAACTTGTGACCATTTCCATCCTCAGAGAAATAGGTGCTACACTTGTCGATATCCATGGTCAGCATG
AACATCAGGAGCTTATGGATGAAGCGAGACATTTGCCACTACTTGATCAATTCGGCGCGGAAGAAATTGATCCTGCTCAG
AATGAATATGCTCAAGTATTTCGCCGCTATGAGCAGACGTTATATAAACTTAAATCCTTGAGTGAAAATGACCAGCAGAC
AGCCCATCGGCTCGACTTAATTCAATTTCAATTAGATGAAATTCATAAGTCAAATTTAAAGCCGAACGAAGACGAAGAAT
TATCTGAGGAAAAAAGAAGACTGGGGAATTTCGAGAGGGTATTTGAAGCCATCCAAACAGGCTATAACGCTTTACAGGGG
GAACAAAAGGGACTTGATTGGATAGGGATGGTCATGGGCTCCCTAGAAGAGGCGGCTGCACTTGATACAAGCTACCGAGA
ATTATCTGATTTGGTTTCAAATAGTTTTTATCAATTAGAGGATGCAGCACAAACATTAAGAAATGAATTAGACGTTCTAG
AATATGATCCGCAGAGATTAAATGAAATTGAAGCCCGTTTAAATGAGATTAATCAACTGAAACGGAAGTATGGGAAAACT
ATTCCAGAAATATTAGAATACGCTGCCAAAATTGAAGAAGAAATTGAAACACTCCAAAATAAAGAAACGCATATTGGAGA
GCTCGAAAAGGAATTAGTATCTATAAAAAAAGACTTAGTCCTTGAGGCAAAACAATTAACCGATATTCGCCGTAAATGGG
CAATAAAGTTAACTAAATTAATTCATCAGGAATTAAAAGAACTGTATATGGAAAAAACTATTTTTGAAATTCGTTTTGAA
TCCGAGCAGCTTCATTTTGCTAAAACTGGCGTCGATCATATCGAATTTTATATTTCCACCAATCCTGGGGAACCATTAAA
ACCATTGTCAAAAGTGGCATCAGGTGGAGAATTGTCTCGAATCATGCTGGCATTAAAAAGTATCTTCTCTAAACATCAAG
GGGTAACCTCGATCATTTTTGATGAAGTAGACACTGGTGTCAGCGGAAGGGTCGCCCAATCAATTGCTGAAAAAATTTAT
AAAGTCGCTGTAGGTTCTCAGGTTCTTTGTATATCCCATTTACCCCAAGTAGCAGCAATGGCTGATACACACCTGTATAT
AGCGAAAGATATTAAGGGCGGCCGTACAAAAACCTCTGTTACATCCTTAAAGACAAAGGAAAAGATCAAGGAAATCGGCC
GAATGATTTCGGGAACAGAAATTACCGATTTAACGAAGCAACATGCAGAGGAATTATTGCAATTAGCTGGTAAAAATAAG
AAAAAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.756

100

0.61