Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   L1999_RS17170 Genome accession   NZ_CP091110
Coordinates   3657338..3659182 (-) Length   614 a.a.
NCBI ID   WP_235739663.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3652338..3664182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS17155 (L1999_17155) - 3653628..3654299 (-) 672 WP_235739660.1 response regulator transcription factor -
  L1999_RS17160 (L1999_17160) - 3654299..3655498 (-) 1200 WP_235739661.1 sensor histidine kinase -
  L1999_RS17165 (L1999_17165) - 3655849..3657081 (-) 1233 WP_235739662.1 cytochrome P450 -
  L1999_RS17170 (L1999_17170) rcrQ 3657338..3659182 (-) 1845 WP_235739663.1 ABC transporter ATP-binding protein Regulator
  L1999_RS17175 (L1999_17175) rcrP 3659175..3660935 (-) 1761 WP_235739664.1 ABC transporter ATP-binding protein Regulator
  L1999_RS17180 (L1999_17180) - 3660960..3661457 (-) 498 WP_235739665.1 helix-turn-helix domain-containing protein -
  L1999_RS17185 (L1999_17185) - 3661661..3662179 (-) 519 WP_235739666.1 helix-turn-helix transcriptional regulator -
  L1999_RS17190 (L1999_17190) - 3662463..3663695 (+) 1233 WP_235744377.1 cytochrome P450 -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67967.54 Da        Isoelectric Point: 7.2833

>NTDB_id=647786 L1999_RS17170 WP_235739663.1 3657338..3659182(-) (rcrQ) [Neobacillus drentensis strain JC05]
MAEKEFANQGHQTEQSKGPRLKGRQRGSQASQGRNLSQSFKQLFTYSRAYVPAIVVALILSMAGSIFNIVGPHMLGDITD
TITKGMMTKIDMDAVVHVATILVIFYSLMFVFQYVQGFIMATATQRISKSLRNDLSKKMNRLPLKYFDSTSTGDVLSRVT
NDVDMVGQTLNQSISGLTSAITLFLGSLVMMFWTNWIMAIAAVLSTFIGFALMSLLISKSQVFFGRQQKQLGKLNGYIEE
TYSGHNVVKAYNGEKMAKATFQEINTGLYDSAWKSQFLSGLMMPFMMFVGNLGYVVVCIVGAALAVNGHISFGVIVSFML
YIRLFTQPLTQIAQGATQLQSTAAASGRVFEFLNEKELADESEKKDRLETVTGDVEFRNVHFGYNENKPVIKNFSVNVKA
GQKVAIVGPTGAGKTTLVNLLMRFYEVNDGEILIDGVPISQLTRGNLHDLFCMVLQDTWLFEGTIRENIIYSSKGVTEEE
LESACKAVGLHHFIKTLLNGYDTILDDKASLSAGQKQLITIARAMVKTSPLLILDEATSSVDTRTEMLIQQAMDKLTVGK
TSFVIAHRLSTIKNADMILVMKDGDIFETGTHEELLKQNGFYAELYNSQFEEAS

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=647786 L1999_RS17170 WP_235739663.1 3657338..3659182(-) (rcrQ) [Neobacillus drentensis strain JC05]
TTGGCTGAGAAAGAGTTTGCTAATCAGGGTCACCAAACTGAACAATCTAAAGGGCCACGCCTAAAAGGACGCCAAAGAGG
CTCTCAAGCGAGTCAAGGCAGAAACCTTTCGCAAAGCTTTAAACAATTATTCACTTATTCGCGTGCATATGTACCGGCGA
TTGTTGTTGCCCTGATCCTATCAATGGCGGGGTCCATCTTTAATATCGTTGGTCCTCACATGCTTGGGGATATAACTGAT
ACAATCACCAAAGGAATGATGACAAAAATTGATATGGATGCCGTTGTTCACGTGGCAACTATTCTTGTTATTTTTTATTC
ATTAATGTTCGTGTTTCAATATGTCCAAGGTTTTATCATGGCGACCGCCACACAGCGGATTTCGAAATCTTTAAGAAATG
ATCTATCAAAAAAAATGAACCGTTTGCCGTTAAAATACTTTGACTCAACAAGTACTGGTGATGTGCTTAGCCGTGTGACC
AATGATGTCGATATGGTCGGTCAAACACTGAACCAGAGTATAAGCGGGTTGACTTCAGCCATTACGTTATTCCTGGGTTC
GTTGGTGATGATGTTTTGGACGAATTGGATCATGGCGATTGCTGCTGTTTTATCCACATTCATTGGTTTTGCGTTAATGT
CCCTACTAATTTCAAAGTCACAGGTTTTCTTTGGACGTCAGCAAAAGCAGCTTGGCAAATTGAACGGGTATATTGAAGAG
ACCTATTCAGGACACAATGTAGTAAAAGCTTATAATGGAGAAAAGATGGCGAAAGCAACTTTTCAGGAAATCAATACTGG
GTTGTATGACAGCGCCTGGAAATCACAATTCCTATCCGGTCTGATGATGCCATTTATGATGTTTGTCGGAAACCTTGGCT
ATGTCGTGGTTTGTATTGTCGGAGCGGCCCTTGCTGTCAATGGCCATATCTCATTCGGTGTCATTGTTTCCTTTATGTTG
TACATTCGTCTTTTCACTCAGCCGCTTACCCAGATTGCCCAGGGAGCCACACAGTTGCAGTCAACAGCCGCGGCCAGTGG
GCGTGTCTTTGAATTTCTGAATGAAAAAGAACTAGCCGATGAAAGTGAAAAGAAAGACAGGCTTGAAACGGTTACAGGCG
ATGTAGAGTTCAGAAATGTACACTTTGGCTATAACGAAAATAAGCCAGTCATCAAAAACTTCTCGGTAAATGTCAAGGCA
GGGCAAAAAGTGGCGATTGTCGGTCCGACCGGAGCGGGCAAGACGACTTTGGTCAATCTGCTGATGCGTTTCTATGAAGT
AAATGATGGGGAAATCTTGATTGATGGTGTGCCGATTAGTCAGCTTACCAGGGGGAATCTTCATGATTTGTTCTGTATGG
TCCTTCAGGATACATGGCTGTTTGAGGGCACGATCCGTGAGAATATCATTTATTCCAGCAAGGGAGTTACTGAGGAAGAG
CTGGAGTCAGCTTGTAAAGCAGTCGGGCTGCACCACTTTATTAAAACCTTGCTTAATGGATACGATACAATCCTTGATGA
TAAAGCGAGCTTGTCCGCAGGTCAGAAACAGCTGATTACCATTGCCCGTGCAATGGTGAAAACTTCACCATTGCTTATTT
TAGATGAAGCAACAAGTTCCGTCGATACTCGGACAGAAATGCTCATCCAACAGGCAATGGACAAATTGACAGTGGGGAAA
ACATCATTTGTCATTGCCCACAGGCTATCAACCATTAAAAATGCTGACATGATTCTTGTCATGAAGGATGGCGACATCTT
CGAAACAGGAACCCATGAAGAACTGTTGAAGCAAAATGGTTTCTATGCAGAGCTGTACAACAGTCAGTTTGAAGAAGCAT
CATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(55-329)

ABC transporter (ABC_tran)

(392-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.443

92.997

0.534