Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   L1999_RS06390 Genome accession   NZ_CP091110
Coordinates   1339020..1340840 (+) Length   606 a.a.
NCBI ID   WP_235742788.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334020..1345840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS06370 (L1999_06370) spxA 1334646..1335041 (+) 396 WP_205178781.1 transcriptional regulator SpxA -
  L1999_RS06375 (L1999_06375) mecA 1335314..1335985 (+) 672 WP_235744269.1 adaptor protein MecA -
  L1999_RS06380 (L1999_06380) cls 1336062..1337573 (+) 1512 WP_235744270.1 cardiolipin synthase -
  L1999_RS06385 (L1999_06385) - 1337680..1338876 (+) 1197 WP_235742787.1 competence protein CoiA family protein -
  L1999_RS06390 (L1999_06390) pepF 1339020..1340840 (+) 1821 WP_235742788.1 oligoendopeptidase F Regulator
  L1999_RS06395 (L1999_06395) - 1341467..1342345 (-) 879 WP_235742789.1 ClpXP adapter SpxH family protein -
  L1999_RS06400 (L1999_06400) - 1342329..1342739 (-) 411 WP_235742790.1 globin -
  L1999_RS06405 (L1999_06405) - 1342977..1343561 (-) 585 WP_235742791.1 CYTH domain-containing protein -
  L1999_RS06410 (L1999_06410) - 1343717..1344085 (+) 369 WP_235742792.1 hypothetical protein -
  L1999_RS06415 (L1999_06415) - 1344151..1344789 (+) 639 WP_235742793.1 GTP pyrophosphokinase family protein -
  L1999_RS06420 (L1999_06420) - 1344839..1345633 (+) 795 WP_235742794.1 NAD kinase -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69916.29 Da        Isoelectric Point: 4.8002

>NTDB_id=647776 L1999_RS06390 WP_235742788.1 1339020..1340840(+) (pepF) [Neobacillus drentensis strain JC05]
MANETKVKQLPARSEIPVEDTWKLEDIFASDQDWEKEYQEIKNQIPEIKQYEGKLGESAETLYQALQFQDKLLERIGKLY
TYSHMRYDQDTTNSFYQGLDDRMKNLYSQAASQLAFIVPEILSIDEGKVNNFLNEQPELKLYEHALEEINLQRPHVLSAE
QEALLAEASEVMDASSNTFGMLNNADIEFPTIQDENGEEVEVTHGRYSRFLESADQRVRRDAFQAVYKTYGAFKNTFAST
LSGNVKKDNFNARVRKYDSARHAALSANNIPESVYDNLVDTVTENLHLLHRYVKLRKKVLGLEELHMYDLYTPLVKDVKM
EIKYEDAKDLVIKGLAPLGEEYSNILKKGFENRWVDVHENKGKRSGAYSSGAYGTHPYILMNWQDNVNNLFTLAHEFGHS
VHSFYTRKNQPYAYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTEAYYALNKKYYGEEDIFIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIEE
FLSAGSSDYPIEVLKKAGVDMTSASPIKDACKVFEEKLNELEKLLG

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=647776 L1999_RS06390 WP_235742788.1 1339020..1340840(+) (pepF) [Neobacillus drentensis strain JC05]
ATGGCCAATGAAACTAAAGTAAAGCAGCTGCCAGCAAGAAGTGAAATTCCAGTTGAGGACACCTGGAAATTAGAAGATAT
CTTTGCAAGTGATCAGGACTGGGAAAAAGAGTATCAAGAAATTAAGAATCAAATCCCTGAGATAAAGCAATACGAAGGCA
AATTAGGAGAGAGTGCGGAAACACTCTATCAAGCCTTACAGTTCCAAGACAAATTGTTAGAACGGATCGGCAAGCTTTAT
ACATATTCACATATGCGTTACGACCAAGATACAACAAACTCCTTTTACCAAGGCTTAGATGATAGGATGAAAAATCTCTA
TTCCCAAGCTGCGAGTCAGCTAGCCTTTATTGTCCCGGAAATTCTCTCAATTGACGAGGGCAAGGTAAATAACTTCTTAA
ATGAACAGCCAGAATTAAAATTATATGAACACGCGCTGGAAGAAATCAATTTACAAAGACCGCATGTTTTAAGTGCAGAA
CAGGAAGCGTTGTTGGCTGAGGCAAGTGAAGTAATGGATGCCTCAAGTAATACATTTGGTATGTTGAACAATGCAGATAT
AGAATTTCCTACCATTCAAGATGAAAACGGAGAAGAGGTTGAAGTAACGCATGGGCGCTACAGCCGCTTCTTAGAAAGTG
CGGATCAGCGTGTTAGACGTGACGCTTTTCAAGCCGTTTATAAAACCTATGGAGCTTTTAAGAATACCTTTGCAAGTACG
CTTAGCGGAAATGTAAAAAAGGATAATTTCAATGCGAGAGTTAGGAAATATGATTCCGCAAGACATGCAGCATTATCAGC
GAATAACATACCGGAGAGTGTGTACGATAACCTAGTCGATACCGTAACGGAGAATCTTCACTTGTTACATCGTTATGTCA
AGCTGCGGAAGAAGGTACTTGGGCTTGAAGAGCTTCATATGTATGATTTGTATACTCCGCTAGTGAAAGATGTAAAAATG
GAAATCAAGTATGAGGATGCAAAAGATTTAGTTATCAAGGGTCTTGCACCATTAGGGGAGGAATATTCAAACATCCTAAA
AAAAGGCTTCGAAAACCGCTGGGTGGATGTTCATGAAAACAAGGGTAAACGCAGTGGTGCCTATTCTTCTGGGGCCTACG
GAACCCATCCATATATCTTAATGAACTGGCAGGATAATGTAAATAATTTATTTACGCTCGCCCATGAATTTGGCCACTCT
GTGCATAGTTTCTATACACGTAAAAATCAGCCGTATGCATATGGAAATTATTCGATATTTGTGGCGGAAGTAGCTTCAAC
TTGTAATGAGGCACTCCTCAATGACTATTTATTAAAAACCATTGATGACGAACAAAAAAGGATTTATCTATTGAATCATT
ATCTAGAGGGCTTTAGAGGAACTGTGTTCCGTCAGACTATGTTTGCTGAATTTGAACATTTAATTCATCAAAAGGCACAA
AATAATGAAGCATTGACAGCCGATTCTTTAACTGAAGCTTATTATGCATTAAATAAGAAGTATTACGGTGAGGAAGATAT
TTTTATTGATGAAGAAATCGGTTTGGAATGGGCAAGAATTCCGCATTTTTATTACAATTATTATGTCTATCAATATGCAA
CTGGATTTAGTGCAGCCACAGCATTAAGCAAACAGATTCTAGAAGAAGGCGAGCCGGCGGTTAAGCGGTATATTGAAGAG
TTCTTAAGTGCTGGAAGTTCTGACTATCCAATTGAAGTCCTTAAAAAAGCAGGAGTCGATATGACCAGTGCTTCGCCAAT
TAAGGATGCATGTAAGGTATTTGAAGAAAAATTAAATGAATTAGAAAAACTATTAGGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

98.185

0.49