Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   L1999_RS02540 Genome accession   NZ_CP091110
Coordinates   517009..517959 (+) Length   316 a.a.
NCBI ID   WP_235742091.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512009..522959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS02520 (L1999_02520) nagE 512967..514412 (+) 1446 WP_235742087.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  L1999_RS02525 (L1999_02525) - 514515..515117 (+) 603 WP_235742088.1 methyltransferase -
  L1999_RS02530 (L1999_02530) - 515165..516175 (+) 1011 WP_235742089.1 DUF418 domain-containing protein -
  L1999_RS02535 (L1999_02535) - 516304..516783 (-) 480 WP_235742090.1 hypothetical protein -
  L1999_RS02540 (L1999_02540) ceuB 517009..517959 (+) 951 WP_235742091.1 ABC transporter permease Machinery gene
  L1999_RS02545 (L1999_02545) - 517952..518905 (+) 954 WP_235742092.1 iron chelate uptake ABC transporter family permease subunit -
  L1999_RS02550 (L1999_02550) - 518902..519663 (+) 762 WP_235742093.1 ABC transporter ATP-binding protein -
  L1999_RS02555 (L1999_02555) - 519680..520630 (+) 951 WP_235742094.1 siderophore ABC transporter substrate-binding protein -
  L1999_RS02560 (L1999_02560) - 520836..522296 (+) 1461 WP_235742095.1 PAS domain S-box protein -
  L1999_RS02565 (L1999_02565) - 522337..522873 (-) 537 WP_235742096.1 ribonuclease H-like YkuK family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34703.93 Da        Isoelectric Point: 10.2577

>NTDB_id=647763 L1999_RS02540 WP_235742091.1 517009..517959(+) (ceuB) [Neobacillus drentensis strain JC05]
MKKRYLLLMLAILSGVSLFVGVSSISPSDLLNFQSDETQVFLISRVPRLVAIILAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMMQKMLVALAFALAGTFLFMQILDRIKLKDAIFIPLVGLMFGNILSSVTTFFAYKADVI
QNMSAWLQGDFSMVMKGRYELLYISIPILIIAYFYANRFTVAGMGEDFSKNLGLAYRRIVNIGLVLVALITVTVVLTVGM
IPFLGLIIPNVISIFKGDHLQKTLPHTALLGASFLLVCDILGRIIIYPYEISISLMVGVIGSGIFLYLLFRRRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=647763 L1999_RS02540 WP_235742091.1 517009..517959(+) (ceuB) [Neobacillus drentensis strain JC05]
ATGAAGAAACGATATCTATTATTGATGTTAGCTATATTGTCAGGAGTCTCATTGTTTGTGGGAGTTAGCAGTATATCACC
TAGTGATCTCCTAAACTTCCAATCTGATGAAACGCAAGTATTTCTAATCAGCAGGGTACCGCGGCTTGTCGCCATCATTC
TTGCCGGAGCAGGTATGAGCATTGCAGGACTTATCATGCAGCAGCTGAGCCGTAATAAATTTGTCTCACCAACAACAGCT
GGAACACTTGATGCCACCCGGTTAGGAATATTGGTATCCATGCTGCTATTTGCTAACGCCTCAATGATGCAAAAAATGCT
TGTTGCCTTGGCGTTTGCACTTGCGGGAACGTTTTTATTTATGCAAATTTTAGACCGAATTAAGTTGAAGGATGCCATTT
TTATCCCATTAGTTGGTTTAATGTTCGGCAACATATTATCTTCAGTCACGACGTTCTTTGCCTACAAGGCAGATGTAATT
CAAAACATGTCCGCCTGGCTTCAAGGAGATTTTTCTATGGTGATGAAAGGCCGCTATGAACTCTTATACATAAGTATTCC
GATTTTGATTATCGCCTATTTCTATGCCAACCGTTTTACTGTTGCCGGAATGGGGGAAGATTTTTCAAAAAATCTAGGCC
TTGCCTATCGGAGAATCGTCAACATTGGGCTGGTGCTCGTTGCTCTAATAACGGTAACGGTTGTCCTCACAGTCGGAATG
ATTCCGTTTCTCGGTCTAATTATTCCCAATGTCATCTCGATTTTTAAAGGGGACCACCTGCAAAAAACCCTGCCACATAC
GGCCTTACTAGGAGCAAGCTTTTTACTAGTTTGCGATATTCTGGGAAGAATCATCATTTATCCATACGAGATTTCTATTA
GCCTGATGGTTGGAGTCATAGGCAGCGGAATCTTCCTTTATCTTCTATTTAGGAGGAGAGCTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

99.051

0.528