Detailed information NTG0647655

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG250_RS25065
• Genome accession: NZ_CP107877
• Coordinates: 5788911..5789909 (+)
• Length: 332 a.a.
• NCBI ID: WP_326582145.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00487
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5783911..5794909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG250_RS25040 (OG250_25095)	-	5784115..5785665 (+)	1551	WP_326582141.1	MFS transporter	-
OG250_RS25045 (OG250_25100)	-	5786114..5786620 (-)	507	WP_327729258.1	MarR family transcriptional regulator	-
OG250_RS25050 (OG250_25105)	-	5786829..5787614 (+)	786	WP_326582143.1	class III extradiol ring-cleavage dioxygenase	-
OG250_RS25055 (OG250_25110)	-	5787840..5788187 (+)	348	WP_327732223.1	DUF1330 domain-containing protein	-
OG250_RS25060 (OG250_25115)	-	5788199..5788717 (-)	519	WP_327729259.1	N-acetyltransferase family protein	-
OG250_RS25065 (OG250_25120)	rpoS	5788911..5789909 (+)	999	WP_326582145.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG250_RS25070 (OG250_25125)	-	5790577..5791551 (-)	975	WP_327729260.1	YafY family protein	-
OG250_RS25075 (OG250_25130)	-	5791654..5793228 (+)	1575	WP_327729261.1	MFS transporter	-
OG250_RS25080 (OG250_25135)	-	5793495..5794346 (+)	852	WP_327729262.1	DeoR/GlpR family DNA-binding transcription regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37159.84 Da
• Isoelectric Point: 4.9607

>NTDB_id=647655 OG250_RS25065 WP_326582145.1 5788911..5789909(+) (rpoS) [Streptomyces sp. NBC_00487]
MATRAVAARRSSASGRTDAARSVRASGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQILDGEEAARAD
ATREELEALVADSERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPQEIAAELGSNADRVVDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAVA

Nucleotide

• Length: 999 bp

>NTDB_id=647655 OG250_RS25065 WP_326582145.1 5788911..5789909(+) (rpoS) [Streptomyces sp. NBC_00487]
ATGGCAACCCGTGCCGTCGCCGCTCGTCGTTCGTCCGCCTCCGGCCGGACCGACGCGGCTCGCAGCGTTCGCGCCTCTGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCGGGTGTGTTCGCGCAGCAGATCCTCGACGGCGAGGAGGCGGCCAGGGCGGAC
GCCACCCGCGAAGAGCTCGAGGCCCTCGTCGCGGACAGCGAGCGGGCCAAGGACATCTTCATCCGGTCGAACCTGCGGCT
CGTCGTGGCGGTCGCCCGGCGTTATCCGCGCAGTGGCCTGCCCCTGCTCGACCTCATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCGGTGGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCCACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCGATAGCGGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTCGTCGAGGAACTGGGCCGGATCCGCCGCGT
GCAGCGCGAGTTCAACCGCGAGCACGGGCGCGACCCCGAGCCCCAGGAGATCGCCGCCGAACTCGGTTCCAACGCGGACC
GCGTCGTCGACGTCCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGGCGCCTCGACCAGCGCACCGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGGACCC
TCACCGAGGTCGGCAAGGAGCACGGGCTCACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTCGAACTGAAG
AAGCTCGCCCGCGACACGGGCTTCGACGCCGTCGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364