Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG250_RS10555 Genome accession   NZ_CP107877
Coordinates   2490530..2491306 (+) Length   258 a.a.
NCBI ID   WP_020114122.1    Uniprot ID   A0A5P8KDE7
Organism   Streptomyces sp. NBC_00487     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2485530..2496306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG250_RS10540 (OG250_10550) - 2485634..2486236 (+) 603 WP_327727531.1 TerD family protein -
  OG250_RS10545 (OG250_10555) - 2486351..2489245 (-) 2895 WP_326576324.1 vitamin B12-dependent ribonucleotide reductase -
  OG250_RS10550 (OG250_10560) nrdR 2489405..2489968 (-) 564 WP_327727532.1 transcriptional regulator NrdR -
  OG250_RS10555 (OG250_10565) dinR/lexA 2490530..2491306 (+) 777 WP_020114122.1 transcriptional repressor LexA Regulator
  OG250_RS10560 (OG250_10570) - 2491509..2493500 (-) 1992 WP_327727533.1 ATP-dependent DNA helicase -
  OG250_RS10565 (OG250_10575) - 2493704..2494447 (-) 744 WP_326576332.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27936.61 Da        Isoelectric Point: 7.0666

>NTDB_id=647621 OG250_RS10555 WP_020114122.1 2490530..2491306(+) (dinR/lexA) [Streptomyces sp. NBC_00487]
MTTTADSATITAQDRSQSRLEPVHAMNEATNHEGPKRALPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEPI
PGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=647621 OG250_RS10555 WP_020114122.1 2490530..2491306(+) (dinR/lexA) [Streptomyces sp. NBC_00487]
GTGACCACCACCGCTGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAACCATGAAGGGCCCAAGCGAGCCTTGCCCGGCCGACCTCCAGGCATCAGGGCTGACAGCTCCGGGCTCA
CCGACCGGCAGCGCCGGGTCATCGAGGTGATCAGGGACTCGGTGCAGCGGCGCGGATACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTGTCCAGCACGTCCTCCGTGGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCTTGCGGCG
CGACCCGCACCGCCCGCGTGCGTACGAGGTCCGCGGCTCCGACCAGTCCTCGGCACAGCCGACGGACACGGCGGGCAAGC
CGGCCGCTTCGTACGTGCCGCTCGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTGGCCGAGGAGTCCGTGGAGGACGTG
TTCCCGCTTCCCCGCCAGTTGGTGGGCGACGGCGAGCTCTTCGTCCTGAAGGTCGTCGGTGACTCCATGATCGAGGCCGC
GATCTGTGACGGTGACTGGGTGACGGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTGGACG
GCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCCGCCTACGAGCCCATC
CCGGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTGCTGCGCCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P8KDE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.19

81.395

0.376