Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG381_RS33710 Genome accession   NZ_CP107869
Coordinates   7359116..7359895 (-) Length   259 a.a.
NCBI ID   WP_046257039.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7354116..7364895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS33700 (OG381_33720) - 7355694..7356455 (+) 762 WP_327722620.1 GNAT family N-acetyltransferase -
  OG381_RS33705 (OG381_33725) - 7356960..7358936 (+) 1977 WP_327719763.1 ATP-dependent DNA helicase -
  OG381_RS33710 (OG381_33730) dinR/lexA 7359116..7359895 (-) 780 WP_046257039.1 transcriptional repressor LexA Regulator
  OG381_RS33715 (OG381_33735) nrdR 7360460..7361020 (+) 561 WP_327719764.1 transcriptional regulator NrdR -
  OG381_RS33720 (OG381_33740) - 7361187..7364081 (+) 2895 WP_327719765.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27977.66 Da        Isoelectric Point: 7.0666

>NTDB_id=647587 OG381_RS33710 WP_046257039.1 7359116..7359895(-) (dinR/lexA) [Streptomyces sp. NBC_00490]
MTTTADSATITAQDRSQGRLEPVHAMNEATNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=647587 OG381_RS33710 WP_046257039.1 7359116..7359895(-) (dinR/lexA) [Streptomyces sp. NBC_00490]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCCCGAGGGGCACAAGCGCTCCCTGCCGGGCCGACCGCCAGGCATCCGGGCGGACAGCTCGGGGCTCA
CCGACAGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGAGGGAGATC
GGACAGGCCGTCGGCCTCTCCAGCACCTCCTCGGTCGCACACCAGCTCATGGCACTGGAACGCAAGGGCTTCCTGCGGCG
CGACCCGCACCGCCCGCGCGCATACGAGGTGCGGGGCTCGGACCAGGCCGCCTCCGCCCAGCCCACGGACACCGCCGGCA
AGCCCGCCGCGTCCTACGTCCCGCTGGTCGGCCGTATCGCCGCTGGCGGACCGATCCTCGCGGAGGAGTCCGTCGAGGAT
GTGTTCCCGCTTCCACGACAGCTCGTCGGTGACGGCGAGTTGTTCGTCCTGAAGGTCGTCGGCGACTCCATGATCGAGGC
CGCCATCTGCGACGGCGACTGGGTCACGGTCCGCCGTCAGCCCGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACGCCGCCTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCAGTGCTGCGCCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375