Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   SCAZ3_RS01215 Genome accession   NZ_AIDX01000001
Coordinates   266478..267515 (-) Length   345 a.a.
NCBI ID   WP_003044435.1    Uniprot ID   A0AAV3FT85
Organism   Streptococcus canis FSL Z3-227     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 261478..272515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS01195 (SCAZ3_08205) - 262419..263897 (-) 1479 WP_003044424.1 sugar ABC transporter ATP-binding protein -
  SCAZ3_RS01200 (SCAZ3_08210) rbsD 263913..264311 (-) 399 WP_003044426.1 D-ribose pyranase -
  SCAZ3_RS01205 (SCAZ3_08215) rbsK 264286..265197 (-) 912 WP_003044429.1 ribokinase -
  SCAZ3_RS01210 (SCAZ3_08220) - 265190..266173 (-) 984 WP_003044432.1 LacI family DNA-binding transcriptional regulator -
  SCAZ3_RS01215 (SCAZ3_08225) sepM 266478..267515 (-) 1038 WP_003044435.1 SepM family pheromone-processing serine protease Regulator
  SCAZ3_RS01220 (SCAZ3_08230) coaD 267502..267993 (-) 492 WP_003044438.1 pantetheine-phosphate adenylyltransferase -
  SCAZ3_RS01225 (SCAZ3_08235) rsmD 267983..268522 (-) 540 WP_003044441.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SCAZ3_RS01230 (SCAZ3_08240) asnA 268715..269707 (-) 993 WP_003044444.1 aspartate--ammonia ligase -
  SCAZ3_RS01235 tnpA 270048..270512 (+) 465 Protein_253 IS200/IS605 family transposase -
  SCAZ3_RS01240 (SCAZ3_08250) arcC 270799..271749 (-) 951 WP_003044451.1 carbamate kinase -
  SCAZ3_RS12360 - 271987..272419 (+) 433 Protein_255 IS110 family transposase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37690.50 Da        Isoelectric Point: 9.7859

>NTDB_id=64757 SCAZ3_RS01215 WP_003044435.1 266478..267515(-) (sepM) [Streptococcus canis FSL Z3-227]
MKIIKKIKWWLVSLFALVALLITLFFPLPYYVEMPGGAYDIRSVLQVNGKEDKGKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAIYQALTLANKPVTLDYKGVYVLDVSKDSTFKGALNLADTVTGVNDK
QFKSSTELVDYVSHLKLGDKVTVQFMSDSQPKSETGRIIKLKNGKNGIGIALTDHTKVRSEDKIAFSTQGVGGPSAGLMF
TLDIYDQIVKEDLRKGRIIAGTGTIGKHGEVGDIGGAGLKVVAAADAGAEIFFVPNNPVDKALKKTHPKAISNYEEAKRA
AKQLKTKMKIVPVTNVQEALAYLRK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=64757 SCAZ3_RS01215 WP_003044435.1 266478..267515(-) (sepM) [Streptococcus canis FSL Z3-227]
ATGAAAATAATTAAAAAAATCAAATGGTGGCTGGTTAGCCTTTTTGCTCTAGTAGCTTTGCTGATTACCCTCTTTTTCCC
TCTACCTTATTACGTTGAAATGCCTGGCGGCGCTTATGATATTCGCTCTGTTTTACAAGTTAATGGAAAAGAAGATAAAG
GGAAGGGATCTTATCAATTTGTAGCCGTTAGCCTTAGCCGCGCCAGTTTGGCACAGTTATTGTATGCTTGGTTAACCCCT
TTTACCGAAATCAGTTCCGTTGAAGACACTACGGGTGGTTACAGTGATGCTGATTATATCCGCATTAACCAATTCTACAT
GGAAACCTCGCAAAATGCAGCGATCTATCAGGCATTAACCTTGGCGAACAAACCCGTTACGTTGGATTACAAAGGGGTTT
ACGTATTAGATGTTAGCAAAGACTCAACCTTCAAAGGTGCCTTGAATTTAGCAGATACTGTCACTGGTGTGAATGACAAG
CAATTTAAGAGTTCGACAGAGCTTGTGGACTATGTTTCTCATTTAAAACTTGGGGATAAAGTAACTGTTCAGTTTATGAG
TGATAGTCAGCCCAAGTCTGAGACAGGCCGTATTATTAAACTTAAAAACGGTAAAAATGGTATTGGGATTGCTCTTACAG
ACCATACTAAAGTTAGGTCAGAGGATAAGATCGCGTTTAGCACGCAAGGTGTTGGTGGTCCCAGTGCTGGTTTGATGTTT
ACCCTTGATATTTATGACCAAATTGTCAAGGAGGATCTTCGTAAAGGTCGTATCATCGCAGGTACAGGAACGATTGGCAA
ACATGGCGAAGTGGGAGATATTGGTGGCGCAGGCCTTAAAGTTGTGGCTGCCGCAGATGCTGGTGCTGAAATATTCTTTG
TTCCTAACAATCCTGTGGACAAGGCCTTAAAAAAAACGCATCCCAAAGCCATCAGCAACTATGAAGAAGCTAAGCGAGCA
GCTAAGCAATTAAAAACTAAAATGAAGATTGTGCCTGTGACCAATGTTCAGGAAGCTTTGGCTTATCTTCGGAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.884

100

0.719


Multiple sequence alignment