Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   SCAZ3_RS01055 Genome accession   NZ_AIDX01000001
Coordinates   230321..232612 (+) Length   763 a.a.
NCBI ID   WP_003044330.1    Uniprot ID   A0A2D4DPL6
Organism   Streptococcus canis FSL Z3-227     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 225321..237612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS01025 (SCAZ3_08020) - 226108..226896 (-) 789 WP_003044313.1 TrmB family transcriptional regulator -
  SCAZ3_RS12520 - 227451..227556 (-) 106 Protein_211 FeoB small GTPase domain-containing protein -
  SCAZ3_RS01035 (SCAZ3_08030) - 227553..228032 (-) 480 WP_003044319.1 FeoA family protein -
  SCAZ3_RS01040 (SCAZ3_08035) - 228243..228977 (-) 735 WP_003044324.1 amino acid ABC transporter ATP-binding protein -
  SCAZ3_RS01045 (SCAZ3_08040) - 228977..229663 (-) 687 WP_003044327.1 amino acid ABC transporter permease -
  SCAZ3_RS01050 (SCAZ3_08045) - 229790..230020 (-) 231 WP_002983885.1 YkuJ family protein -
  SCAZ3_RS01055 (SCAZ3_08050) clpE 230321..232612 (+) 2292 WP_003044330.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SCAZ3_RS01060 (SCAZ3_08055) - 232739..233194 (+) 456 WP_003044333.1 NUDIX hydrolase -
  SCAZ3_RS01065 (SCAZ3_08060) - 233245..233547 (+) 303 WP_003044336.1 DUF1827 family protein -
  SCAZ3_RS01070 (SCAZ3_08065) ileS 233776..236577 (-) 2802 WP_003044342.1 isoleucine--tRNA ligase -
  SCAZ3_RS01075 (SCAZ3_08070) - 236843..237601 (-) 759 WP_003044345.1 DivIVA domain-containing protein -

Sequence


Protein


Download         Length: 763 a.a.        Molecular weight: 84830.02 Da        Isoelectric Point: 5.4128

>NTDB_id=64756 SCAZ3_RS01055 WP_003044330.1 230321..232612(+) (clpE) [Streptococcus canis FSL Z3-227]
MLCQNCNLNESTIHLYTNVNGKQRQVDLCQNCYQIMKTDPTNPILGGLNRGQKAQDRSSHPFFDDFFGDLNNFRAFGNLP
NTPPTQAGQNGNGGGRHGGNYNGQGQPQPQAPNQQAKGLLEEFGINVTDIARHGDIDPVIGRDEEITRVIEILNRRTKNN
PVLIGEPGVGKTAVVEGLAQKIVDGTVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRNRKDVILFIDEIHE
IVGAGSAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILKGIQPKYEDYHH
VKYSPAAIEAAAHLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDKRLIEAENLKAQATRDEDYERAAYFRDQ
IAKYKEMQAQKVNEQDIPIITEKNIEAIVEQKTNIPVGDLKEKEQSQLVNLANDLKAHVIGQDDAVDKIAKAIRRNRVGL
GTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSADNMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEQVRRNPY
SLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKSEASVGFGAAREGRTNSVLGELSNFFS
PEFMNRFDGIIEFKALSKDNLLHIVDLMLADVNQRLAYNNIDLDVTQKVKEKLVDLGYDPKMGARPLRRTIQDYIEDAIT
DYYLEHPTEKDLRAVMTSNGNIMIKAAKKGETVPTTQEQGNNH

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=64756 SCAZ3_RS01055 WP_003044330.1 230321..232612(+) (clpE) [Streptococcus canis FSL Z3-227]
ATGCTTTGTCAAAATTGTAATTTAAACGAATCAACCATTCATCTTTACACAAATGTTAATGGAAAACAAAGACAGGTTGA
CCTTTGTCAAAACTGTTACCAAATCATGAAAACAGACCCAACCAATCCTATTTTAGGTGGCCTAAACAGAGGACAAAAAG
CCCAAGATCGGTCTTCACATCCTTTCTTTGATGACTTTTTCGGCGACCTCAATAATTTTAGAGCCTTCGGTAATCTTCCT
AATACACCGCCTACACAAGCGGGCCAAAATGGCAACGGAGGAGGACGTCACGGTGGCAATTATAATGGGCAAGGGCAACC
ACAGCCGCAAGCCCCAAATCAGCAAGCAAAAGGCCTACTAGAAGAATTTGGCATTAACGTGACCGATATTGCAAGGCATG
GCGATATTGACCCTGTTATCGGCCGTGATGAGGAAATCACCCGTGTGATTGAAATCCTCAATCGCCGAACCAAAAATAAT
CCTGTGCTTATTGGTGAGCCAGGAGTTGGTAAAACTGCTGTTGTAGAAGGTTTGGCTCAAAAAATTGTTGATGGTACTGT
TCCTCATAAATTGCAGGGCAAACAAGTTATCCGTCTTGATGTGGTTAGTCTTGTTCAGGGAACAGGTATCCGTGGTCAAT
TTGAAGAGCGCATGCAGAAATTAATGGAAGAAATTCGCAATCGCAAGGATGTCATTCTCTTCATTGATGAAATTCATGAG
ATTGTCGGTGCCGGTTCTGCTGGCGATGGCAATATGGATGCTGGTAATATTTTAAAACCAGCCTTAGCCCGTGGTGAATT
ACAGCTCGTCGGTGCTACCACCTTAAATGAATACCGTATTATTGAAAAAGATGCCGCCTTAGAACGACGCATGCAGCCGG
TGAAAGTTGACGAACCTTCTGTAGAAGAAACCATTACGATTTTAAAAGGTATCCAACCCAAATACGAAGACTACCATCAT
GTCAAATATAGCCCAGCTGCTATTGAAGCTGCCGCTCATTTATCCAACCGCTATATTCAAGACCGTTTTCTTCCAGATAA
GGCTATTGACCTCTTGGACGAAGCTGGTTCCAAAATGAATTTAACCCTCAACTTTGTTGATCCGAAAGAGATTGACAAAC
GCCTTATTGAAGCAGAAAATCTCAAAGCCCAAGCTACTCGAGACGAAGACTATGAACGCGCCGCTTATTTCCGCGATCAA
ATTGCAAAATACAAAGAAATGCAGGCTCAAAAAGTCAATGAGCAAGATATTCCAATCATTACTGAAAAAAACATTGAAGC
TATTGTAGAGCAAAAAACTAATATTCCAGTTGGAGACTTGAAAGAAAAAGAACAGTCTCAACTTGTAAATTTAGCCAACG
ATCTAAAAGCACACGTGATTGGACAAGACGATGCTGTTGATAAAATTGCTAAGGCTATTCGTCGTAACCGCGTGGGACTT
GGTACGCCAAATCGTCCAATCGGTTCCTTCCTTTTTGTTGGACCGACTGGGGTCGGTAAAACGGAATTGTCTAAACAGCT
GGCTATTGAACTCTTTGGCTCGGCAGACAACATGATTCGCTTTGACATGTCCGAATACATGGAAAAACACGCTGTCGCCA
AATTAGTCGGAGCACCTCCAGGTTATGTCGGTTATGAAGAAGCCGGACAGTTAACCGAACAAGTTCGTCGCAATCCGTAT
TCCCTTATTCTCTTAGATGAGGTGGAAAAAGCCCATCCTGACGTCATGCACATGTTCTTGCAAGTTCTTGATGATGGCCG
TTTAACAGATGGTCAAGGACGAACAGTCAGCTTCAAGGACACCATTATTATCATGACTTCCAATGCTGGAACAGGCAAGA
GTGAAGCTTCTGTCGGATTTGGTGCGGCTAGAGAAGGACGAACAAATTCTGTTCTAGGTGAATTAAGCAACTTCTTCAGC
CCAGAATTCATGAACCGTTTTGATGGTATTATCGAATTTAAGGCCTTGAGCAAGGATAACCTCCTACACATCGTTGATTT
AATGTTAGCTGATGTTAATCAACGCTTAGCTTACAATAATATCGACCTAGATGTGACACAAAAGGTCAAAGAAAAATTAG
TTGACCTAGGCTATGATCCTAAAATGGGCGCTCGACCTCTTCGTCGCACCATTCAAGATTACATTGAAGATGCTATTACA
GACTACTATTTAGAACATCCAACTGAAAAAGACTTGCGTGCCGTTATGACAAGCAATGGGAACATTATGATTAAAGCCGC
TAAAAAAGGGGAAACCGTTCCTACTACCCAAGAACAGGGCAACAATCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2D4DPL6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

85.96

98.952

0.851

  clpE Streptococcus pneumoniae Rx1

84.058

99.476

0.836

  clpE Streptococcus pneumoniae D39

84.058

99.476

0.836

  clpE Streptococcus pneumoniae R6

84.058

99.476

0.836

  clpE Streptococcus pneumoniae TIGR4

83.926

99.476

0.835

  clpC Lactococcus lactis subsp. cremoris KW2

74.574

100

0.746

  clpC Bacillus subtilis subsp. subtilis str. 168

49.781

89.777

0.447

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.584

84.404

0.393

  clpC Streptococcus pneumoniae Rx1

48

81.913

0.393

  clpC Streptococcus pneumoniae D39

48

81.913

0.393

  clpC Streptococcus pneumoniae TIGR4

47.84

81.913

0.392

  clpC Streptococcus mutans UA159

47.826

81.389

0.389

  clpC Streptococcus thermophilus LMD-9

46.795

81.782

0.383

  clpC Streptococcus thermophilus LMG 18311

46.474

81.782

0.38


Multiple sequence alignment